Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A18
(329 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0030 + 3115502-3115750,3115835-3116104,3116193-3116633,311... 31 0.17
05_05_0210 - 23285241-23285338,23286297-23286447,23286660-232867... 29 1.2
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 28 2.0
01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052 28 2.0
08_01_0999 + 10145782-10146392,10147665-10147734,10149409-101496... 27 3.6
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 27 4.7
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 27 4.7
03_03_0208 + 15459260-15459922 27 4.7
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931... 26 6.2
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636... 26 6.2
05_01_0183 - 1289608-1289643,1289965-1290026,1290113-1290162,129... 26 6.2
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118... 26 6.2
06_01_0589 + 4235361-4235433,4236484-4237187,4237584-4237805,423... 26 8.3
05_06_0178 + 26167825-26168057,26168772-26169078 26 8.3
04_03_0601 - 17875540-17875776,17876611-17876736,17877700-178777... 26 8.3
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258... 26 8.3
02_01_0507 - 3682383-3682703,3682830-3682970,3683071-3683147,368... 26 8.3
>09_02_0030 +
3115502-3115750,3115835-3116104,3116193-3116633,
3116697-3116783,3116872-3116973,3117532-3117631,
3117791-3117807
Length = 421
Score = 31.5 bits (68), Expect = 0.17
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 154 PMM*CSTLTESSARTSNVPGDVDDFSRDHLMIEDRGCED 270
P C + +SS RT + PG VDDF +L I D GC++
Sbjct: 74 PARKCRHIPQSSERTLDAPGIVDDF---YLNILDWGCKN 109
>05_05_0210 -
23285241-23285338,23286297-23286447,23286660-23286748,
23287108-23288394,23288460-23288516,23289446-23289644,
23290240-23290342,23291048-23291229,23291850-23291899,
23292192-23292360
Length = 794
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 221 STSPGTFEVLAEDSVRVEHYIIGGSHG 141
S SPG E+ A+ SV +E Y+IG G
Sbjct: 243 SDSPGNAEICAKRSVLMERYVIGRQLG 269
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 141 IPSRCASEAGSASGGIRLAAQWGDTNSPRAP 49
+PS + + SAS R AA NSPR+P
Sbjct: 147 VPSLTENSSSSASSSFRRAASNATLNSPRSP 177
>01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052
Length = 492
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 11 AAGIRHEDMGASRGARGEFVSPHCAASLMPP 103
AAG+ H GAS ARG+++ C L PP
Sbjct: 3 AAGLNHG--GASPSARGKWLESVCGKYLQPP 31
>08_01_0999 +
10145782-10146392,10147665-10147734,10149409-10149643,
10149726-10149799,10149881-10149955
Length = 354
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 135 SRCASEAGSASGGIRLAAQWGDTNSPRAPRDAPISSCRIPAARGI 1
+R AS A A+GG QW D R DA ++ C+ RGI
Sbjct: 168 ARWASAAEFATGGAGCGVQWWD----RRKGDAVVAQCKGVWGRGI 208
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 5 PRAAGIRHEDMGASRGARGEFVS 73
P +AG+R +D G S GAR + VS
Sbjct: 434 PGSAGMRSDDGGDSDGARSKLVS 456
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 153 RISWIPSRCASEAGSASGGIRLAAQWGDTNSPRAPRDAPISSCRIPAARGI 1
R S++P + S+ GG ++S PR AP PAA G+
Sbjct: 33 RSSYVPPHLRNRGASSGGGAAAPPPSSSSSSAPPPRAAPGLLAPRPAAAGM 83
>03_03_0208 + 15459260-15459922
Length = 220
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 11 AAGIRHEDMGASRGARGE-FVSPHCAASLMPPDAEPASDAQRDGIHEILL*CNVQP*RSP 187
A G E+ G RG + E F+ C+ S P +A P + ++L P R P
Sbjct: 59 ARGAAGEEEGQDRGYQRERFLLRPCSTST-PREASPPLPPPPEP-PMVVLCLRAAPPRPP 116
Query: 188 PPGPQMSRG 214
PP P ++ G
Sbjct: 117 PPTPHLAVG 125
>10_08_1025 -
22391267-22391767,22392641-22392736,22392838-22393106,
22393257-22393431,22393503-22393718,22393819-22393926,
22394020-22394544,22394631-22394819,22394924-22395041,
22395172-22395437,22395521-22395658
Length = 866
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 218 TSPGTFEVLAEDSVRVEHYIIGGSHGSHPAAHRRQARHP 102
T FE+LA++ R + I+ H AH HP
Sbjct: 652 THQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHP 690
>06_01_0838 -
6360232-6360460,6360571-6360719,6360825-6360933,
6361446-6362276,6362865-6362969,6363084-6363180,
6363303-6363341,6363435-6363477
Length = 533
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 168 TLHHRRISWIPSRCAS---EAGSASGGIRLAAQWGDTNSPRAPRDAPISSCRIP 16
TLHH + ++ S AS E +A + PRA R AP ++ R+P
Sbjct: 312 TLHHTSLCFVCSHLASGEKEGDELRRNADVAEILKSAHFPRACRPAPAAARRVP 365
>05_01_0183 -
1289608-1289643,1289965-1290026,1290113-1290162,
1290260-1290357,1290547-1290927,1291191-1291697,
1291922-1291996,1292095-1292286,1292599-1292658
Length = 486
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 136 WDP*DPPMM*CSTLTESSARTSNV 207
WDP DPP C TL +++ S V
Sbjct: 56 WDPWDPPHPPCPTLPPTASLMSQV 79
>01_06_0265 -
28011181-28011240,28011298-28011375,28011493-28011802,
28012913-28013533,28013733-28013818
Length = 384
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 162 HHRRISWIPSRCASEAGSASGGIRLAAQWGDTNSPRAPRDAPISSCRIPAA 10
HH + S G+ +GG L QWG R RDA S+ P++
Sbjct: 121 HHHPSDSSDTASPSSNGAGTGGDVLL-QWGHNKRSRCRRDASSSANAAPSS 170
>06_01_0589 +
4235361-4235433,4236484-4237187,4237584-4237805,
4237900-4238559
Length = 552
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 126 ASEAGSASGGIRLAAQWGDTNSPRAPRDAPISS 28
A+ S + G A+W DTN+ D P SS
Sbjct: 490 ANSRDSEAAGDAAVAEWSDTNTDTFLSDTPSSS 522
>05_06_0178 + 26167825-26168057,26168772-26169078
Length = 179
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 138 PSRCASEAGSASGGIRLAAQWGDTNSPRAPRDAPISSC 25
PS A + G GG +A + ++SP PI+ C
Sbjct: 9 PSCSAKQQGHTGGGEAVACERSASSSPYGQTQLPINLC 46
>04_03_0601 -
17875540-17875776,17876611-17876736,17877700-17877727,
17878131-17878936
Length = 398
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 165 LHHRRISWIPSRCASEAGSASGGIRLAAQWGDTNSP 58
L H + W R A +A G+R+A Q G+T P
Sbjct: 350 LIHPLLLWPVGRSAGGGYAAILGVRMALQGGETEHP 385
>03_05_0961 -
29224548-29225125,29225286-29225308,29225736-29225864,
29226533-29228217
Length = 804
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 239 WSRLKSSTSPGTFEVLAEDSVRVEHYIIGGSHGSHPAAHRRQAR 108
W S P + L + S ++ GGS+G H ++ RRQ++
Sbjct: 749 WRHSSSDIGPSRDDNLLKRSETIKSS--GGSNGDHSSSRRRQSK 790
>02_01_0507 -
3682383-3682703,3682830-3682970,3683071-3683147,
3683835-3683901
Length = 201
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1
Query: 152 GSHGSHPAAHRRQARHPG 99
GSH SH HRRQA H G
Sbjct: 102 GSH-SHQRPHRRQALHAG 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,028,667
Number of Sequences: 37544
Number of extensions: 208761
Number of successful extensions: 665
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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