Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A18
(329 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29318| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.52
SB_45427| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.69
SB_24159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0) 28 1.6
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045) 27 3.7
SB_26328| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_12826| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_39685| Best HMM Match : ANTH (HMM E-Value=1.5e-11) 27 4.9
SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_5582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 26 6.5
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_21764| Best HMM Match : TPP_enzyme_N (HMM E-Value=1.1e-06) 26 8.5
SB_46352| Best HMM Match : L71 (HMM E-Value=0.19) 26 8.5
SB_44913| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_30829| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 26 8.5
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_6535| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 26 8.5
SB_1746| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
>SB_29318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 29.9 bits (64), Expect = 0.52
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 64 LTASAARRSHILVPNSCSPGD 2
LT + R H+ NSCSPGD
Sbjct: 12 LTPAPVERQHVAASNSCSPGD 32
>SB_45427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.5 bits (63), Expect = 0.69
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 73 GHELTASAARRSHILVPNSCSPGD 2
GH T +A R L+ NSCSPGD
Sbjct: 10 GHLTTNAATRVRFPLISNSCSPGD 33
>SB_24159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 64 LTASAARRSHILVPNSCSPGD 2
L S +R +LV NSCSPGD
Sbjct: 6 LLISRSRPGRLLVSNSCSPGD 26
>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
Length = 834
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 165 LHHRRISWIPSRCASEAGSASGGIRLA 85
LH+R++ W SR + AG S G+R+A
Sbjct: 689 LHNRQLLWHGSRTTNYAGILSQGLRIA 715
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 1 DPPGCRNSARGYG 39
DPPGCRNS G G
Sbjct: 34 DPPGCRNSIDGNG 46
>SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045)
Length = 545
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 85 GAVGGHELTASAARRSHILVPNSCSPGD 2
GA+ + S R + I NSCSPGD
Sbjct: 233 GAIVNRRVLPSLVRATAINASNSCSPGD 260
>SB_26328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -1
Query: 38 PYPRAEFLQPGG 3
PYP EFLQPGG
Sbjct: 17 PYPDIEFLQPGG 28
>SB_12826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = -1
Query: 233 RLKSSTSPGT--FEVLAE---DSVRVEHYIIGGSHGSHPAAHRRQARHPG 99
R ++S SPG F+ + D+ V HYI SH S + RQA HPG
Sbjct: 11 RSRTSGSPGLQEFDPTKDEKPDASFVGHYINDPSHRSWRHSLGRQASHPG 60
>SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 1 DPPGCRNSARGYG 39
DPPGCRNS G G
Sbjct: 17 DPPGCRNSMIGSG 29
>SB_39685| Best HMM Match : ANTH (HMM E-Value=1.5e-11)
Length = 523
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 138 PSRCASEAGSASGGIRLAAQWGDTNSP 58
P +A +SGG +QWG TN+P
Sbjct: 415 PFSGGQQAFPSSGGFGSTSQWGATNAP 441
>SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 138 PSRCASEAGSASGGIRLAAQWGDTNSP 58
P +A +SGG +QWG TN+P
Sbjct: 396 PFSGGQQAFPSSGGFGSTSQWGATNAP 422
>SB_5582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 88 RGAVGGHELT--ASAARRSH-ILVPNSCSPGD 2
R + H LT ++ + H I++ NSCSPGD
Sbjct: 3 RNIIYSHRLTNYSNCLNKCHNIVISNSCSPGD 34
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 185 DSVRVEHYIIGGSHGSHPAAHRRQARHPG 99
D+ V HYI SH S + RQA HPG
Sbjct: 1574 DASFVGHYINDPSHRSWRHSLGRQASHPG 1602
>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 995
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 94 DAPGCRACLRCAAGWDP*DPPMM*CSTLTESSARTSNVPGDVDDFSRD 237
D PG CLRC A P C+T + + V D+++ SRD
Sbjct: 622 DVPGSSECLRCGANTVS-LPTRDGCTTNNCTFSPAEGVEYDLNELSRD 668
>SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 1 DPPGCRNSARG 33
DPPGCRNS G
Sbjct: 17 DPPGCRNSIEG 27
>SB_21764| Best HMM Match : TPP_enzyme_N (HMM E-Value=1.1e-06)
Length = 183
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 1 DPPGCRNSAR 30
DPPGCRNS R
Sbjct: 17 DPPGCRNSIR 26
>SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)
Length = 179
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 1 DPPGCRNSARGYG 39
DPPGCRNS + G
Sbjct: 17 DPPGCRNSIKDKG 29
>SB_44913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 43 RSHILVPNSCSPGD 2
R+ IL+ NSCSPGD
Sbjct: 2 RTAILLSNSCSPGD 15
>SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 1 DPPGCRNSAR 30
DPPGCRNS R
Sbjct: 17 DPPGCRNSIR 26
>SB_30829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 40 SHILVPNSCSPGD 2
+H+ V NSCSPGD
Sbjct: 14 NHLKVSNSCSPGD 26
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = -3
Query: 144 WIPSRCASEAGSASGGIRLAAQWGDTNSPRAPRDAPISSCRIPAAR 7
WI CA+ G ++ +WG AP D+ + I R
Sbjct: 313 WIAEICAAFLREVRGVLKETLEWGPGADKIAPLDSDVGQALIARGR 358
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 1 DPPGCRNSARG 33
DPPGCRNS G
Sbjct: 93 DPPGCRNSIAG 103
>SB_6535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 64 LTASAARRSHILVPNSCSPGD 2
+ + R S I+ NSCSPGD
Sbjct: 1 MRSQRGRASDIVASNSCSPGD 21
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 1 DPPGCRNSARG 33
DPPGCRNS G
Sbjct: 104 DPPGCRNSITG 114
>SB_1746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 43 RSHILVPNSCSPGD 2
RS ++ NSCSPGD
Sbjct: 2 RSRLITSNSCSPGD 15
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,615
Number of Sequences: 59808
Number of extensions: 192049
Number of successful extensions: 1432
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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