Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A18
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z70037-2|CAA93879.2|  906|Caenorhabditis elegans Hypothetical pr...    26   5.5  
D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.        26   5.5  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    26   5.5  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    26   7.3  

>Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical
           protein T27D12.2b protein.
          Length = 902

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 178 TESSARTSNVPGDVDDFS-RDHLMIEDRGCEDRRP 279
           T+SS ++S +P D+  F+ R H+++ED  C    P
Sbjct: 18  TQSSGQSS-LPSDIVQFTARPHMLMEDVECSPIEP 51


>Z70037-2|CAA93879.2|  906|Caenorhabditis elegans Hypothetical
           protein T27D12.2a protein.
          Length = 906

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 178 TESSARTSNVPGDVDDFS-RDHLMIEDRGCEDRRP 279
           T+SS ++S +P D+  F+ R H+++ED  C    P
Sbjct: 18  TQSSGQSS-LPSDIVQFTARPHMLMEDVECSPIEP 51


>D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.
          Length = 902

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 178 TESSARTSNVPGDVDDFS-RDHLMIEDRGCEDRRP 279
           T+SS ++S +P D+  F+ R H+++ED  C    P
Sbjct: 18  TQSSGQSS-LPSDIVQFTARPHMLMEDVECSPIEP 51


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
           family protein 5 protein.
          Length = 938

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 8   RAAGIRHEDMGASRGARGEFVSPHCAASLMPPDAEPASD 124
           RA     E+  +   A GEFV+P C  S  P     A++
Sbjct: 860 RAVLSPEEEQASMYNAEGEFVNPFCRLSYAPKQPPVAAN 898


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 169 STLTESSARTSNVPGDVDDFSRDHLMIEDRGCEDRR 276
           ST  E+     N  G V + SRD   +  + CE++R
Sbjct: 413 STSMENHLGFHNGGGTVSEHSRDDKFVSPQNCEEKR 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,410,904
Number of Sequences: 27780
Number of extensions: 141461
Number of successful extensions: 310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)