Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A17
         (389 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O82966 Cluster: ORF C6; n=2; root|Rep: ORF C6 - Ralston...    33   2.0  
UniRef50_P36286 Cluster: Non-structural polyprotein [Contains: U...    32   3.4  
UniRef50_Q5TSI7 Cluster: ENSANGP00000027961; n=1; Anopheles gamb...    31   6.0  
UniRef50_Q5T749 Cluster: Keratinocyte proline-rich protein; n=97...    31   6.0  
UniRef50_A7D2F8 Cluster: Major facilitator superfamily MFS_1; n=...    31   7.9  

>UniRef50_O82966 Cluster: ORF C6; n=2; root|Rep: ORF C6 - Ralstonia
           solanacearum (Pseudomonas solanacearum)
          Length = 364

 Score = 33.1 bits (72), Expect = 2.0
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = -3

Query: 276 SGRARTRPIYRELAQVLQQNN-SNRCCRLHRSQCPSRRGMKSGIEYHQL--WVVQSPPAD 106
           SGR  T P YR+L Q+          C   R  C + +G  +G++  Q   W ++ PP D
Sbjct: 272 SGRPETAPAYRQLRQIRSMPTVIGGACTSTRCTCYTAQGTDAGLDDMQCREW-IRKPPFD 330

Query: 105 --RAVRLSREPL 76
             R  + ++EP+
Sbjct: 331 PYREPQAAQEPI 342


>UniRef50_P36286 Cluster: Non-structural polyprotein [Contains:
           Unknown protein; Helicase (2C- like protein) (P2C);
           3A-like protein; Viral genome-linked protein (VPg);
           Thiol protease P3C (EC 3.4.22.-) (3C-like protease)
           (3C-pro); RNA-directed RNA polymerase (EC 2.7.7.48)];
           n=135; root|Rep: Non-structural polyprotein [Contains:
           Unknown protein; Helicase (2C- like protein) (P2C);
           3A-like protein; Viral genome-linked protein (VPg);
           Thiol protease P3C (EC 3.4.22.-) (3C-like protease)
           (3C-pro); RNA-directed RNA polymerase (EC 2.7.7.48)] -
           San Miguel sea lion virus serotype 1 (SMSV-1) (SMSV
           serotype 1)
          Length = 1879

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 132 WVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVAEAS 4
           W+V+  P D   R  R+P+   P  +R  T N Y R L   AS
Sbjct: 32  WMVRCGPLDHDSRHGRDPVRASPQAKRVRTPNPYPRHLKPAAS 74


>UniRef50_Q5TSI7 Cluster: ENSANGP00000027961; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000027961 - Anopheles gambiae
           str. PEST
          Length = 330

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 112 WRRLYNPQLMILYS*LHSTTGRTLTPVETTTTIR 213
           W++  N  LM+ Y+  HSTTG+T T +    TIR
Sbjct: 297 WKKDLNEYLMMYYTTPHSTTGKTPTELMFGRTIR 330


>UniRef50_Q5T749 Cluster: Keratinocyte proline-rich protein; n=97;
           Theria|Rep: Keratinocyte proline-rich protein - Homo
           sapiens (Human)
          Length = 579

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 23/56 (41%), Positives = 28/56 (50%)
 Frame = -3

Query: 213 SNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRES 46
           ++RC R   S C  RRG K  IE      + SP   R V   R P+E  PPI+R S
Sbjct: 306 NSRCPRRPISSCSQRRGPKCRIE------ISSPCCPRQVPPQRCPVEI-PPIRRRS 354


>UniRef50_A7D2F8 Cluster: Major facilitator superfamily MFS_1; n=1;
           Halorubrum lacusprofundi ATCC 49239|Rep: Major
           facilitator superfamily MFS_1 - Halorubrum lacusprofundi
           ATCC 49239
          Length = 458

 Score = 31.1 bits (67), Expect = 7.9
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 240 VPDILAVFALYLKPTFQSINDLPAALLRDVTAPGT*TMFSAV 365
           +P + AVF+ Y+   FQS++  PA   RD   PG  T  +A+
Sbjct: 80  LPALGAVFSFYV--VFQSLSQFPAGKWRDSRGPGALTFLAAL 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,357,878
Number of Sequences: 1657284
Number of extensions: 5983187
Number of successful extensions: 16387
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16381
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 16143318346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)