Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A17
         (389 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   1.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.7  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         20   10.0 

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -1

Query: 134 CGLYSLRQLIGLFVCHGSRSSQGHQYN 54
           CG  +     G F C G +S  G  YN
Sbjct: 8   CGEPAAGFHFGAFTCEGCKSFFGRTYN 34


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 84   EPLEPGPPIQRESTGNAYRRPLVAE 10
            +P EPG  +      NAY R ++ E
Sbjct: 1101 QPCEPGQYVPDPHNCNAYYRCVLGE 1125


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 258 RPIYRELAQVLQQ 220
           +PI+ E+AQV +Q
Sbjct: 14  KPIHEEVAQVWEQ 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,250
Number of Sequences: 336
Number of extensions: 1415
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8225022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)