Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A17
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0106 - 13460882-13462086,13463452-13463629                       28   3.0  
01_06_0373 - 28841462-28842850                                         28   3.0  
02_01_0243 - 1601977-1602834,1602857-1603063                           27   4.0  
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589...    27   4.0  
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619...    27   5.3  
06_03_0400 - 20420257-20421837                                         27   7.0  
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458...    26   9.2  
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965...    26   9.2  

>07_03_0106 - 13460882-13462086,13463452-13463629
          Length = 460

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 141 HQLWVVQSPPADRAVRLSREPLEPGPPIQR 52
           H+L V+   PA R  R +  PL P P   R
Sbjct: 127 HRLRVIDGDPAPRLARTTAAPLSPDPAFLR 156


>01_06_0373 - 28841462-28842850
          Length = 462

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 135 LWVVQSPPADRAVRLSREPLEP 70
           LWVV+SPP+D   +   +P EP
Sbjct: 286 LWVVRSPPSDDPAKKFDKPPEP 307


>02_01_0243 - 1601977-1602834,1602857-1603063
          Length = 354

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 162 MKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVAEA 7
           MKS   Y  +W+  +   +  VRL R  L PG     E   + Y + ++ +A
Sbjct: 249 MKSTEPYMDVWIAAAAGGENWVRLLRVELPPGHYYSGEVKPHGYGKAVLDDA 300


>01_05_0416 +
           21956050-21956512,21958001-21958065,21958772-21958933,
           21959006-21959107
          Length = 263

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -3

Query: 246 RELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPG 67
           ++L   L     +R  + HRS+  ++ G  S   +  L   +SP   R    SR    P 
Sbjct: 2   QQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQ 61

Query: 66  PPIQRESTGNAYRRP 22
           PP  ++ST  + RRP
Sbjct: 62  PP--KDSTARSGRRP 74


>02_02_0543 +
           11360514-11361350,11361434-11361559,11361648-11361976,
           11362078-11362861
          Length = 691

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 117 PPADRAVRLSREPLEPGPPIQ---RESTGNAYRRPLVAEAS 4
           PP   A+ + ++P  P PP Q    + T +A+ R L AEA+
Sbjct: 27  PPLPPAIIIHKDPPPPPPPRQPAAAKGTLDAFGRDLTAEAA 67


>06_03_0400 - 20420257-20421837
          Length = 526

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 177 PSRRGMKSGIEYHQLWVVQSPPADRAVRLSRE 82
           P R+GM   I+Y   W  +  PA+  ++  R+
Sbjct: 414 PHRKGMLYNIQYITFWFGEGAPAEAPIKWIRD 445


>08_01_0527 +
           4580599-4580818,4580933-4581806,4581891-4581955,
           4582055-4582110,4582955-4583058,4583310-4583382,
           4583474-4583654,4584537-4584622
          Length = 552

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 120 SPPADRAVRLSREPLEPGPPIQRESTGN 37
           SPP  R    S EP +  PP++R++ G+
Sbjct: 295 SPPRRRTRHDSHEPKDKLPPLKRQALGD 322


>04_04_1630 -
           34896021-34896143,34896329-34896403,34896500-34896556,
           34897176-34897352,34897426-34897492,34898043-34898101,
           34898188-34898241,34898455-34898604,34898709-34898918,
           34898980-34899039,34899399-34899527,34899616-34899720,
           34899935-34900024,34900630-34900695,34901047-34901115,
           34901348-34901467,34901572-34901634,34901681-34901817,
           34902070-34902160,34902298-34902463,34902700-34904172,
           34905666-34905940,34906322-34906819,34906996-34907145,
           34907840-34907911,34908006-34908266,34908478-34908558,
           34908745-34908996,34909323-34909382,34909602-34909853,
           34910385-34910549,34910589-34910849,34911267-34912307,
           34913398-34913457,34914055-34914165,34914448-34914534,
           34915227-34915300,34915397-34915490,34915644-34915689,
           34916397-34916521
          Length = 2501

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 117 PPADRAVRLSREPLEPGPPIQRESTGNAY 31
           PP+D   R   EP  P PP     +G AY
Sbjct: 316 PPSDYVRRRLLEPPRPPPPAAVNPSGKAY 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,895,898
Number of Sequences: 37544
Number of extensions: 174276
Number of successful extensions: 460
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)