Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A17
         (389 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51856| Best HMM Match : DUF593 (HMM E-Value=3.3)                    30   0.77 
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  28   2.4  
SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)                   27   7.2  
SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_51856| Best HMM Match : DUF593 (HMM E-Value=3.3)
          Length = 314

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 198 RLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPI 58
           R  RS  PSR G+     Y +  +   PP D  V   R  + P P +
Sbjct: 207 RPRRSSSPSRPGLGIAKSYPRSGIRDGPPPDEYVEFLRSGVRPEPQV 253


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/83 (21%), Positives = 31/83 (37%)
 Frame = -3

Query: 255  PIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPL 76
            P+YR   + L  +          S  P +   + G +   +    SP A      ++EP 
Sbjct: 1548 PVYRAYQENLSSSEKENSLSSEHSYSPGKHQRRQGHKERIIASQNSPAAKIRTSHNKEPN 1607

Query: 75   EPGPPIQRESTGNAYRRPLVAEA 7
            + GP      +   Y RP  +E+
Sbjct: 1608 DSGPAWFYPVSNKHYSRPSDSES 1630


>SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 124 YNPQLMILYS*LHSTTGRTLTPVETTTTIRIILLKNLS*FPIYWPCS 264
           Y P L+ILY  L +  GR     +T   + + L  +    P+ W  S
Sbjct: 505 YEPTLLILYEPLKTWAGRLAMRNDTCALVAVSLNMSQKAHPVVWQLS 551


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 252 IYRELAQVLQQNNSNRCCRLHRS 184
           I +++  +L+QN S RC RLH S
Sbjct: 831 IIQKILTILKQNTSLRCLRLHSS 853


>SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)
          Length = 514

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 126 VQSPPADRAVRLSREP 79
           ++SPP DR VRL R P
Sbjct: 144 IKSPPGDRRVRLMRHP 159


>SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 144 YHQLWVVQSPPADRAVRLSREPLEPGPPI 58
           YH   +  SP A   +R S+EP+E G P+
Sbjct: 237 YHSYGLGYSPYAYAPLRASQEPVESGLPL 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,231,461
Number of Sequences: 59808
Number of extensions: 192053
Number of successful extensions: 520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)