Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A17
         (389 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY960854-1|AAX59055.1|  579|Homo sapiens keratinocyte proline-ri...    31   1.0  
AL353779-4|CAI20978.1|  579|Homo sapiens keratinocyte proline-ri...    31   1.0  
BC004286-1|AAH04286.1|  673|Homo sapiens INT1 protein protein.         29   7.1  
AY358482-1|AAQ88846.1| 1029|Homo sapiens HILV1821 protein.             29   7.1  
AB037861-1|BAA92678.1| 1377|Homo sapiens KIAA1440 protein protein.     29   7.1  

>AY960854-1|AAX59055.1|  579|Homo sapiens keratinocyte proline-rich
           protein protein.
          Length = 579

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 23/56 (41%), Positives = 28/56 (50%)
 Frame = -3

Query: 213 SNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRES 46
           ++RC R   S C  RRG K  IE      + SP   R V   R P+E  PPI+R S
Sbjct: 306 NSRCPRRPISSCSQRRGPKCRIE------ISSPCCPRQVPPQRCPVEI-PPIRRRS 354


>AL353779-4|CAI20978.1|  579|Homo sapiens keratinocyte proline-rich
           protein protein.
          Length = 579

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 23/56 (41%), Positives = 28/56 (50%)
 Frame = -3

Query: 213 SNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRES 46
           ++RC R   S C  RRG K  IE      + SP   R V   R P+E  PPI+R S
Sbjct: 306 NSRCPRRPISSCSQRRGPKCRIE------ISSPCCPRQVPPQRCPVEI-PPIRRRS 354


>BC004286-1|AAH04286.1|  673|Homo sapiens INT1 protein protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -3

Query: 234 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPI 58
           Q L+QN  ++    H  +    RG   G  +H L     PP   +    +    P  PI
Sbjct: 416 QTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPKSSPEQPI 474


>AY358482-1|AAQ88846.1| 1029|Homo sapiens HILV1821 protein.
          Length = 1029

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -3

Query: 234 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPI 58
           Q L+QN  ++    H  +    RG   G  +H L     PP   +    +    P  PI
Sbjct: 113 QTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPKSSPEQPI 171


>AB037861-1|BAA92678.1| 1377|Homo sapiens KIAA1440 protein protein.
          Length = 1377

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -3

Query: 234 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPI 58
           Q L+QN  ++    H  +    RG   G  +H L     PP   +    +    P  PI
Sbjct: 461 QTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPKSSPEQPI 519


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,982,118
Number of Sequences: 237096
Number of extensions: 976909
Number of successful extensions: 2747
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2747
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2698607930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)