Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A17
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68010-1|CAD44146.1|   92|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical ...    24   7.2  
AB071420-1|BAB86940.1|  401|Caenorhabditis elegans 2-amino-3-car...    24   7.2  

>Z68010-1|CAD44146.1|   92|Caenorhabditis elegans Hypothetical
           protein T01C1.4 protein.
          Length = 92

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 288 EM*ASGRARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIE 145
           +M A+ R + RP+   +A V +Q N N+C    +    S  G+  GI+
Sbjct: 41  DMPATIRTQDRPVVLYMAPVHKQENENKCV-CGKDGDSSASGISKGIQ 87


>AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3b protein.
          Length = 401

 Score = 24.2 bits (50), Expect(2) = 7.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 49  LSLYWWPWLERLP*QTNSPI 108
           L  YW PWL  +P +T   I
Sbjct: 245 LDKYWMPWLVGMPSETAQAI 264



 Score = 20.6 bits (41), Expect(2) = 7.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 7   GLGDKRPAICISR*LSLYWWPW 72
           GL  K P IC    + L+  PW
Sbjct: 215 GLTTKTPGICEELSVVLFVHPW 236


>AB071420-1|BAB86940.1|  401|Caenorhabditis elegans
           2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
           protein.
          Length = 401

 Score = 24.2 bits (50), Expect(2) = 7.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 49  LSLYWWPWLERLP*QTNSPI 108
           L  YW PWL  +P +T   I
Sbjct: 245 LDKYWMPWLVGMPSETAQAI 264



 Score = 20.6 bits (41), Expect(2) = 7.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 7   GLGDKRPAICISR*LSLYWWPW 72
           GL  K P IC    + L+  PW
Sbjct: 215 GLTTKTPGICEELSVVLFVHPW 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,068,106
Number of Sequences: 27780
Number of extensions: 138582
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)