Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A16
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 0.68
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 0.90
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 28 0.90
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa... 27 1.2
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 27 1.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.1
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 4.8
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 4.8
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 25 6.3
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc... 25 6.3
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 25 8.4
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 8.4
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 8.4
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 25 8.4
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 8.4
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 8.4
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 28.3 bits (60), Expect = 0.68
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 102 SFCNDNICT--GFTIILFSNWRNHL*RDCRTTECWVDDR 212
SFC + + T GF +F N R C T +CW+ DR
Sbjct: 87 SFCGNTLYTYYGFDNPIFLCGPNGAPRMCGTCKCWLPDR 125
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.9 bits (59), Expect = 0.90
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 37 AIPFTVLEIPNIKIKKPTWLQAPSAMTTFALVLLSYFLVTGGIIY 171
++P + PN+ P+ P A F + L+ F+ GG++Y
Sbjct: 2299 SLPVSDRVFPNLGAWNPSEGPGPCASPCFYIALICQFVAVGGLLY 2343
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 27.9 bits (59), Expect = 0.90
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 60 NTKYKNKKANMVTGSFCNDNICTGFTIILFSNWRNHL 170
N +Y + V S C+D + + + I+ + W+NH+
Sbjct: 612 NNQYDSSSLEFVRLSGCHDGLASSISRIIRNVWKNHV 648
>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 7 RRKLKMESLFAIPFTVLEIPNIKIKKPTW 93
+ K K+E ++P L++ ++ KKPTW
Sbjct: 75 KTKRKIEEQSSVPVEELDLVTLRPKKPTW 103
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 352 STPKLNRILLISVAFLCILVSFFTTWI 432
S P + +L + ++ L ++V FFT W+
Sbjct: 79 SHPNIYSLLRLLISVLAVIVVFFTAWV 105
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = -1
Query: 214 HRSSTQHSVVLQSRHK*FLQLLKSMIVKPVQMLSLQKEPVTMLAFLFLYL 65
+++ + V S++ + QL S+ P ++L +KE + MLA LFL+L
Sbjct: 604 YQTDEKTGVFKSSKNLAYSQLDSSLTTNPSKLLE-EKELLEMLATLFLHL 652
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 9 EKTKNGIFICYSFHSS*NTK 68
EK N + IC FH S NTK
Sbjct: 95 EKVFNAVDICVKFHLSINTK 114
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 223 HSRPVAFMPNRVNGQYIMEGLAS 291
HS PV F+P Y+ +G AS
Sbjct: 20 HSEPVNFVPKENAKSYVRQGFAS 42
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 385 SVAFLCILVSFFTTWIFMRMKLPGYLQN*F 474
S+ F IL+ T + KLPGYL+N F
Sbjct: 291 SIYFSTILLREETKSLISPKKLPGYLENLF 320
>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 169 YDVIVEPPSVGSTTDEHGHSRPVAFMPNRVNG 264
Y V+V P+ S E +PV F+ NR+NG
Sbjct: 144 YGVVVHYPNSESLI-ERFVEKPVEFVSNRING 174
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 352 STPKLNRILLISVAFLCILVSFFTTWI 432
S P + +L + ++ L + V FFT W+
Sbjct: 80 SHPNIYFLLRLLISVLAVSVVFFTAWV 106
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 31 LFAIPFTVLEIPNIK--IKKPTWLQAPSAMTTFALVLLSYFLVT 156
+ A+ F PN + ++K + +PS +T+F L L SY T
Sbjct: 25 VLALDFVAKTFPNQENQLEKRDYTYSPSGITSFPLDLQSYTYYT 68
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 406 KYRGKQLILEGSYSVLV*MGCEC 338
+YR K LEG VL +G EC
Sbjct: 327 EYRAKTFCLEGRGKVLYMLGTEC 349
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 259 NGQYIMEGLASSFLFSLGGIGFIILDRTHNPSTPKLN 369
N +G ++ + + IG+ I DR+H PS KL+
Sbjct: 510 NANDFFQGYLAACITLVFFIGYKIYDRSHIPSLDKLD 546
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 338 RSRIIKPIPPSEKRKLEARPSI 273
R ++ KPI +K K+EA P I
Sbjct: 175 RKKLQKPIEKPKKEKIEATPKI 196
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 352 STPKLNRILLISVAFLCILVSFFTTWI 432
S P + +L + ++ L + V FFT W+
Sbjct: 80 SHPNIYFLLRLLISVLAVSVVFFTAWV 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,227
Number of Sequences: 5004
Number of extensions: 46428
Number of successful extensions: 134
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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