Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A16
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0638 + 12493520-12494053                                        141   2e-34
05_06_0194 + 26287854-26288233,26289810-26290044                       31   0.51 
03_04_0162 + 17858802-17861168                                         30   1.2  
11_01_0359 - 2731522-2732346                                           29   2.1  
09_06_0216 + 21627238-21627834                                         28   4.8  
01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454     27   6.3  
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    27   8.4  

>02_02_0638 + 12493520-12494053
          Length = 177

 Score =  141 bits (342), Expect = 2e-34
 Identities = 66/145 (45%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
 Frame = +1

Query: 31  LFAIPFTVLEIPNIKIKKPTWLQAPSAMTTFALVLLSYFLVTGGIIYDVIVEPPSVGSTT 210
           L  +PF+ L  P  +++ P+ L  PS MT FAL+LL+YF V  G++YDVIVEPP +GS  
Sbjct: 32  LRVLPFSFLRPPRTRLRLPSNLALPSPMTVFALILLTYFAVVSGLVYDVIVEPPGIGSVQ 91

Query: 211 DEH-GHSRPVAFMPNRVNGQYIMEGLASSFLFSLGGIGFIILDRTHNPSTPKLNRILLIS 387
           D   G  RPV F+P RVNGQYI+EGL+S  +F +GGIG I+LD   + + P+  R+    
Sbjct: 92  DPATGAVRPVVFLPGRVNGQYIIEGLSSGIMFVIGGIGIILLDLAVDRNRPRSLRVSFGG 151

Query: 388 VAFLCILVSFFTTWIFMRMKLPGYL 462
                I++++    +F+R+K+PGYL
Sbjct: 152 SGVAAIVIAYAMAMLFLRIKIPGYL 176


>05_06_0194 + 26287854-26288233,26289810-26290044
          Length = 204

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 257 TRFGINATGLLW-PCSSVVDPTLGGSTITS*MIPPVTKKYDSKTSANVVIAEGAC-NHVG 84
           +R+  +  G+++ P     D  +   T+T+ M P + K YD       VI+ G+C N  G
Sbjct: 90  SRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGG 149

Query: 83  FFIFIFGISR 54
           ++ + + + R
Sbjct: 150 YYHYSYSVVR 159


>03_04_0162 + 17858802-17861168
          Length = 788

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 169 YDVIVEPPSVGSTTDEHGHSR-PVAFMP 249
           Y V+V+PP  G+ TD+ GH R   +F+P
Sbjct: 56  YIVLVDPPPHGAATDDDGHRRWHESFLP 83


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 343 HNPSTPKLNRIL-LISVAFLCILVSFFTTWIFMRMKLPGY 459
           H P    L R+L L+  AFL +  + F  W+ +R ++P +
Sbjct: 79  HPPPPTCLRRLLGLVVAAFLLLGAATFIVWLLLRPRVPAF 118


>09_06_0216 + 21627238-21627834
          Length = 198

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 313 GIGFIILDRTHNPSTPKLNRILLISVAFLCILVSFFTTWIFMRMK 447
           G+GF ++D    PS+    RI+L+  A +  L+  +  W   R +
Sbjct: 69  GVGFPLVDFLVLPSSENAGRIMLLVWALIGALIMAYYAWSHYRKR 113


>01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454
          Length = 249

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 338 RSRIIKPIPPSEKRKLEARPSIIY*PLTRFGINATGLLWPC 216
           R R  KP+PP + + L  R +++Y P T   I    L  PC
Sbjct: 97  RDRAGKPLPPPQPQSLFVRSALLYYPHTP-SIFVADLPLPC 136


>07_03_0635 +
           20151861-20152249,20152589-20152709,20154914-20154996,
           20155819-20155903,20155987-20156277,20156555-20156645,
           20157380-20158280,20158401-20158561,20158759-20158862,
           20159040-20159205,20159283-20159378,20159694-20159800,
           20160443-20160775,20161393-20161599,20161774-20161857,
           20162887-20163020,20163166-20163393,20163541-20163712,
           20164301-20164555,20164647-20164919
          Length = 1426

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 361 KLNRILLISVAFLCILVSFFTTWIFMRMKLP 453
           K N  L I  AF   ++ F T  +F+R K+P
Sbjct: 536 KRNSFLFIFKAFQLFVLGFITMTLFLRTKMP 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,422
Number of Sequences: 37544
Number of extensions: 279118
Number of successful extensions: 603
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)