Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A16
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44532| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   5e-08
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  

>SB_44532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 31/70 (44%), Positives = 39/70 (55%)
 Frame = -3

Query: 464 CKYPGNFIRMNIQVVKNDTKIQRKATDIRRILFSFGVDGL*VRSRIIKPIPPSEKRKLEA 285
           C Y G+FI M  + VKNDT    K     R   S  +      SR++ P PP E +KLEA
Sbjct: 20  CTY-GSFILMKTRQVKNDTSTHTKPIKSSRNRLSLDMPTELDLSRMMNPTPPIENKKLEA 78

Query: 284 RPSIIY*PLT 255
           RPS++Y PLT
Sbjct: 79  RPSMMYCPLT 88


>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 226 SRPVAFMPNRVNGQYIMEGLASSFLFSLGGIGFIILD--RTHNPSTPKLNRILLISVAFL 399
           +R  +F PN   G ++ E   ++ +   GGI  + L   RT  PS   +N  L I  +  
Sbjct: 201 TRVPSFPPNVYIGFHMREYRLTAHVICTGGIHLVALAYARTRVPSV--INNTLGIMASHH 258

Query: 400 CILVSFFTT-WI 432
           C+++ FF   W+
Sbjct: 259 CLILVFFCAFWV 270


>SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 304 SLGGIGFIILDRTHNPSTPKLNRILLISVAFLCILVSFFTTWIFMRMKLPGYLQ 465
           SL  +  I LDR    + P +   + I  A +CI VS+  T +F    +P +LQ
Sbjct: 118 SLNTLAIISLDRYWVITKPAIGIKITIKRALICIAVSYVYTLVF---SIPLFLQ 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,370
Number of Sequences: 59808
Number of extensions: 333426
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)