BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_A16 (499 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_44532| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 5e-08 SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7 SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9 >SB_44532| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 414 Score = 54.4 bits (125), Expect = 5e-08 Identities = 31/70 (44%), Positives = 39/70 (55%) Frame = -3 Query: 464 CKYPGNFIRMNIQVVKNDTKIQRKATDIRRILFSFGVDGL*VRSRIIKPIPPSEKRKLEA 285 C Y G+FI M + VKNDT K R S + SR++ P PP E +KLEA Sbjct: 20 CTY-GSFILMKTRQVKNDTSTHTKPIKSSRNRLSLDMPTELDLSRMMNPTPPIENKKLEA 78 Query: 284 RPSIIY*PLT 255 RPS++Y PLT Sbjct: 79 RPSMMYCPLT 88 >SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 623 Score = 28.3 bits (60), Expect = 3.7 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = +1 Query: 226 SRPVAFMPNRVNGQYIMEGLASSFLFSLGGIGFIILD--RTHNPSTPKLNRILLISVAFL 399 +R +F PN G ++ E ++ + GGI + L RT PS +N L I + Sbjct: 201 TRVPSFPPNVYIGFHMREYRLTAHVICTGGIHLVALAYARTRVPSV--INNTLGIMASHH 258 Query: 400 CILVSFFTT-WI 432 C+++ FF W+ Sbjct: 259 CLILVFFCAFWV 270 >SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 673 Score = 27.9 bits (59), Expect = 4.9 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +1 Query: 304 SLGGIGFIILDRTHNPSTPKLNRILLISVAFLCILVSFFTTWIFMRMKLPGYLQ 465 SL + I LDR + P + + I A +CI VS+ T +F +P +LQ Sbjct: 118 SLNTLAIISLDRYWVITKPAIGIKITIKRALICIAVSYVYTLVF---SIPLFLQ 168 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,098,370 Number of Sequences: 59808 Number of extensions: 333426 Number of successful extensions: 790 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 741 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 789 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1075029208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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