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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A16
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79759-3|CAB02136.1|  225|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z79758-2|CAB02132.1|  199|Caenorhabditis elegans Hypothetical pr...    31   0.61 
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    29   2.5  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    29   2.5  
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical...    28   4.3  
Z83109-11|CAJ43454.1|  345|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z83116-2|CAB05560.1|  320|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z79759-3|CAB02136.1|  225|Caenorhabditis elegans Hypothetical
           protein ZK858.3 protein.
          Length = 225

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 115 TTFALVLLSYFLVTGGIIYDVIVEPPSVGSTTDEHGHSR 231
           +T+ L+++   ++ GG++ D   E P +  ++DE  H R
Sbjct: 3   STYILIIVPLIIIGGGVVADNTNETPVLAHSSDEQPHQR 41


>Z79758-2|CAB02132.1|  199|Caenorhabditis elegans Hypothetical
           protein W10D5.2 protein.
          Length = 199

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -3

Query: 254 RFGINATGLLWPCSS-VVDPTLGGSTITS*MIPPVTKKYDSKTSANVVIAEGAC-NHVGF 81
           R+ ++  G+++  S    D      T+T+ M P + + YD    A  VI+ G+C N  G+
Sbjct: 86  RYDMDRYGVVFRASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGY 145

Query: 80  FIFIFGISR 54
           + + + + R
Sbjct: 146 YHYAYSVLR 154


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = -2

Query: 378  KDPIQFWCRWVVSAIQNYKTNXXXXXXKAG---SETFHYILTVNTIR-HKCYRSTMAMFI 211
            +DP Q W  WV +    Y  N            SE  H+  TV++++   CY   ++  +
Sbjct: 1445 QDPSQVWVGWVTTQYHYYNVNFDGSQGVRKCRFSEADHHGTTVDSVQSQNCYMVNVSELL 1504

Query: 210  GRRPN 196
               P+
Sbjct: 1505 ATTPD 1509


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = -2

Query: 378  KDPIQFWCRWVVSAIQNYKTNXXXXXXKAG---SETFHYILTVNTIR-HKCYRSTMAMFI 211
            +DP Q W  WV +    Y  N            SE  H+  TV++++   CY   ++  +
Sbjct: 1566 QDPSQVWVGWVTTQYHYYNVNFDGSQGVRKCRFSEADHHGTTVDSVQSQNCYMVNVSELL 1625

Query: 210  GRRPN 196
               P+
Sbjct: 1626 ATTPD 1630


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 152 TKKYDSKTSANVVIAEGACNHVGFFIFIFGISRTVK 45
           T  YD++T+ +V  AEG      F I I GI   V+
Sbjct: 529 TADYDNRTALHVAAAEGRIKVCKFLINIVGIPHDVR 564


>Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 308 SEKRKLEARPSIIY*PLTRFGINATGLLWPCSSVVDPT 195
           S K   E  PS+    L   G++   L  PC S  DPT
Sbjct: 159 SSKENYEKNPSLYQYDLLSTGLDKKNLRKPCDSFEDPT 196


>AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 308 SEKRKLEARPSIIY*PLTRFGINATGLLWPCSSVVDPT 195
           S K   E  PS+    L   G++   L  PC S  DPT
Sbjct: 159 SSKENYEKNPSLYQYDLLSTGLDKKNLRKPCDSFEDPT 196


>Z83109-11|CAJ43454.1|  345|Caenorhabditis elegans Hypothetical
           protein F44G3.12 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 122 NVVIAEGACNHVGFFIFIFGISRTVKGIANKDSIFSFL 9
           N+ I     N VGFFI +  I  TVK I+ K  I   L
Sbjct: 197 NLPIELDTVNRVGFFISLQNILHTVKQISTKKIILEEL 234


>Z83116-2|CAB05560.1|  320|Caenorhabditis elegans Hypothetical
           protein M01B2.2 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 230 LLWPCSSVVDPTLGGSTITS*MIPPVTKKYDSKTSANVVIAEGACNHVG 84
           ++ PCS+++        +TS M   V ++  +  S+ +VI  G C H+G
Sbjct: 32  IMLPCSAIITIKTFTDILTSAMSFFVMQRIVTDGSSILVIPTGPCTHLG 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,199,227
Number of Sequences: 27780
Number of extensions: 261286
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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