Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A16
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79759-3|CAB02136.1| 225|Caenorhabditis elegans Hypothetical pr... 31 0.46
Z79758-2|CAB02132.1| 199|Caenorhabditis elegans Hypothetical pr... 31 0.61
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 29 2.5
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 29 2.5
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z50741-6|CAA90613.3| 331|Caenorhabditis elegans Hypothetical pr... 28 4.3
AL032630-15|CAA21571.3| 331|Caenorhabditis elegans Hypothetical... 28 4.3
Z83109-11|CAJ43454.1| 345|Caenorhabditis elegans Hypothetical p... 27 5.7
Z83116-2|CAB05560.1| 320|Caenorhabditis elegans Hypothetical pr... 27 7.6
>Z79759-3|CAB02136.1| 225|Caenorhabditis elegans Hypothetical
protein ZK858.3 protein.
Length = 225
Score = 31.1 bits (67), Expect = 0.46
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 115 TTFALVLLSYFLVTGGIIYDVIVEPPSVGSTTDEHGHSR 231
+T+ L+++ ++ GG++ D E P + ++DE H R
Sbjct: 3 STYILIIVPLIIIGGGVVADNTNETPVLAHSSDEQPHQR 41
>Z79758-2|CAB02132.1| 199|Caenorhabditis elegans Hypothetical
protein W10D5.2 protein.
Length = 199
Score = 30.7 bits (66), Expect = 0.61
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 254 RFGINATGLLWPCSS-VVDPTLGGSTITS*MIPPVTKKYDSKTSANVVIAEGAC-NHVGF 81
R+ ++ G+++ S D T+T+ M P + + YD A VI+ G+C N G+
Sbjct: 86 RYDMDRYGVVFRASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGY 145
Query: 80 FIFIFGISR 54
+ + + + R
Sbjct: 146 YHYAYSVLR 154
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = -2
Query: 378 KDPIQFWCRWVVSAIQNYKTNXXXXXXKAG---SETFHYILTVNTIR-HKCYRSTMAMFI 211
+DP Q W WV + Y N SE H+ TV++++ CY ++ +
Sbjct: 1445 QDPSQVWVGWVTTQYHYYNVNFDGSQGVRKCRFSEADHHGTTVDSVQSQNCYMVNVSELL 1504
Query: 210 GRRPN 196
P+
Sbjct: 1505 ATTPD 1509
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = -2
Query: 378 KDPIQFWCRWVVSAIQNYKTNXXXXXXKAG---SETFHYILTVNTIR-HKCYRSTMAMFI 211
+DP Q W WV + Y N SE H+ TV++++ CY ++ +
Sbjct: 1566 QDPSQVWVGWVTTQYHYYNVNFDGSQGVRKCRFSEADHHGTTVDSVQSQNCYMVNVSELL 1625
Query: 210 GRRPN 196
P+
Sbjct: 1626 ATTPD 1630
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 152 TKKYDSKTSANVVIAEGACNHVGFFIFIFGISRTVK 45
T YD++T+ +V AEG F I I GI V+
Sbjct: 529 TADYDNRTALHVAAAEGRIKVCKFLINIVGIPHDVR 564
>Z50741-6|CAA90613.3| 331|Caenorhabditis elegans Hypothetical
protein Y62H9A.14 protein.
Length = 331
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 308 SEKRKLEARPSIIY*PLTRFGINATGLLWPCSSVVDPT 195
S K E PS+ L G++ L PC S DPT
Sbjct: 159 SSKENYEKNPSLYQYDLLSTGLDKKNLRKPCDSFEDPT 196
>AL032630-15|CAA21571.3| 331|Caenorhabditis elegans Hypothetical
protein Y62H9A.14 protein.
Length = 331
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 308 SEKRKLEARPSIIY*PLTRFGINATGLLWPCSSVVDPT 195
S K E PS+ L G++ L PC S DPT
Sbjct: 159 SSKENYEKNPSLYQYDLLSTGLDKKNLRKPCDSFEDPT 196
>Z83109-11|CAJ43454.1| 345|Caenorhabditis elegans Hypothetical
protein F44G3.12 protein.
Length = 345
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 122 NVVIAEGACNHVGFFIFIFGISRTVKGIANKDSIFSFL 9
N+ I N VGFFI + I TVK I+ K I L
Sbjct: 197 NLPIELDTVNRVGFFISLQNILHTVKQISTKKIILEEL 234
>Z83116-2|CAB05560.1| 320|Caenorhabditis elegans Hypothetical
protein M01B2.2 protein.
Length = 320
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -3
Query: 230 LLWPCSSVVDPTLGGSTITS*MIPPVTKKYDSKTSANVVIAEGACNHVG 84
++ PCS+++ +TS M V ++ + S+ +VI G C H+G
Sbjct: 32 IMLPCSAIITIKTFTDILTSAMSFFVMQRIVTDGSSILVIPTGPCTHLG 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,199,227
Number of Sequences: 27780
Number of extensions: 261286
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -