Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A16
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29870.1 68417.m04251 expressed protein predicted protein, Ar...   141   3e-34
At2g19340.2 68415.m06035 membrane protein, putative contains 3 t...   138   3e-33
At2g19340.1 68415.m06034 membrane protein, putative contains 3 t...   121   2e-28
At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa s...    32   0.25 
At4g08950.1 68417.m01473 phosphate-responsive protein, putative ...    29   2.3  
At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1...    29   2.3  
At5g62130.1 68418.m07798 Per1-like protein-related                     28   4.0  
At5g15220.1 68418.m01783 ribosomal protein L27 family protein ri...    27   5.3  
At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative sim...    27   7.0  
At5g19855.1 68418.m02359 expressed protein                             27   9.3  
At2g16930.2 68415.m01951 ribosomal protein L27 family protein co...    27   9.3  
At2g16930.1 68415.m01950 ribosomal protein L27 family protein co...    27   9.3  

>At4g29870.1 68417.m04251 expressed protein predicted protein,
           Arabidopsis thaliana, PIR2:T01282
          Length = 172

 Score =  141 bits (341), Expect = 3e-34
 Identities = 68/143 (47%), Positives = 97/143 (67%), Gaps = 1/143 (0%)
 Frame = +1

Query: 40  IPFTVLEIPNIKIKKPTWLQAPSAMTTFALVLLSYFLVTGGIIYDVIVEPPSVGSTTDE- 216
           IPF+ L  P +++K P++   PS MT F+L+LL+YFLV  G +YDVIVEPP +GST D  
Sbjct: 31  IPFSFLRPPRLRLKLPSFT-LPSPMTVFSLILLTYFLVVSGFVYDVIVEPPGIGSTQDPI 89

Query: 217 HGHSRPVAFMPNRVNGQYIMEGLASSFLFSLGGIGFIILDRTHNPSTPKLNRILLISVAF 396
            G  RPV FM  RVNGQYI+EGL+S F+F LGGIG I+LD   + +  K  +    +   
Sbjct: 90  TGSVRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIIMLDLALDKNRAKSVKASYATAGV 149

Query: 397 LCILVSFFTTWIFMRMKLPGYLQ 465
             I++++  + +F+R+K+PGYL+
Sbjct: 150 SSIVIAYVMSMLFIRIKIPGYLR 172


>At2g19340.2 68415.m06035 membrane protein, putative contains 3
           transmembrane domains;
          Length = 173

 Score =  138 bits (333), Expect = 3e-33
 Identities = 66/142 (46%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
 Frame = +1

Query: 40  IPFTVLEIPNIKIKKPTWLQAPSAMTTFALVLLSYFLVTGGIIYDVIVEPPSVGSTTDEH 219
           +PF+ L  P +++K P++   PS MT +AL+LL+YFLV  G +YDVIVEPP +GST D  
Sbjct: 32  VPFSFLRPPRLRLKIPSFT-LPSPMTVYALILLTYFLVVSGFVYDVIVEPPGIGSTQDPT 90

Query: 220 -GHSRPVAFMPNRVNGQYIMEGLASSFLFSLGGIGFIILDRTHNPSTPKLNRILLISVAF 396
            G  RPV FM  RVNGQYI+EGL+S F+F LGGIG ++LD   + +  K  +        
Sbjct: 91  TGTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLDLALDKNKAKSVKASYAVAGV 150

Query: 397 LCILVSFFTTWIFMRMKLPGYL 462
             I++++  + +F+R+K+PGYL
Sbjct: 151 SSIVIAYVMSMLFIRIKIPGYL 172


>At2g19340.1 68415.m06034 membrane protein, putative contains 3
           transmembrane domains;
          Length = 200

 Score =  121 bits (292), Expect = 2e-28
 Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
 Frame = +1

Query: 40  IPFTVLEIPNIKIKKPTWLQAPSAMTTFALVLLSYFLVTGGIIYDVIVEPPSVGSTTDEH 219
           +PF+ L  P +++K P++   PS MT +AL+LL+YFLV  G +YDVIVEPP +GST D  
Sbjct: 32  VPFSFLRPPRLRLKIPSFT-LPSPMTVYALILLTYFLVVSGFVYDVIVEPPGIGSTQDPT 90

Query: 220 -GHSRPVAFMPNRVNGQYIMEGLASSFLFSLGGIGFIILD 336
            G  RPV FM  RVNGQYI+EGL+S F+F LGGIG ++LD
Sbjct: 91  TGTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLD 130


>At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa
           subunit, mitochondrial identical to NADH-ubiquinone
           oxidoreductase 20 kDa subunit mitochondrial [precursor]
           SP:Q42577 from [Arabidopsis thaliana]; contains Pfam
           profile: PF01058 NADH ubiquinone oxidoreductase, 20 Kd
           subunit
          Length = 218

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -3

Query: 254 RFGINATGLLW-PCSSVVDPTLGGSTITS*MIPPVTKKYDSKTSANVVIAEGAC-NHVGF 81
           R+ ++  G+++ P     D  +   T+T+ M P + K YD       VI+ G+C N  G+
Sbjct: 105 RYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGY 164

Query: 80  FIFIFGISR 54
           + + + + R
Sbjct: 165 YHYSYSVVR 173


>At4g08950.1 68417.m01473 phosphate-responsive protein, putative
           (EXO) similar to phi-1 (phosphate-induced gene)
           [Nicotiana tabacum] GI:3759184; contains Pfam profile
           PF04674: Phosphate-induced protein 1 conserved region
          Length = 314

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -3

Query: 188 GSTITS*MIPPVTKKYDSKTSANVVIAEGACNHVGFFIFIFGISRTVKGIANKDSIFSFL 9
           G ++T   I  +  K D + + NVV+        GF +   G     +G+  + S F+++
Sbjct: 126 GKSLTDKKIQTLASKGDQRNAINVVLTSADVTVTGFGMSRCGTHGHARGLGKRGSKFAYI 185

Query: 8   LV 3
            V
Sbjct: 186 WV 187


>At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1.4)
           plant glutamate receptor family, PMID:11379626
          Length = 861

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 34  FAIPFTVLEIPNIKIK-KPTWLQAPSAMTTFALVLLSYFLVTGGIIY 171
           F +PFT + +  +  K K  W+       +  L + S+F++TG I++
Sbjct: 541 FTLPFTDMGLAVVTAKDKSMWIIFKPLTLSLWLTIASFFILTGAIVW 587


>At5g62130.1 68418.m07798 Per1-like protein-related
          Length = 343

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 277 EGLASSFLFSLGGIGFIILDR----THNPSTPKLNRILLISVAFLCI 405
           EGL    +F +GGI  ++       T +PS  KL   L+ S+  LC+
Sbjct: 248 EGLHWKVIFGIGGIELVVWGLWAALTSHPSKWKLRAFLISSILTLCL 294


>At5g15220.1 68418.m01783 ribosomal protein L27 family protein
           ribosomal protein L27, Haemophilus influenzae,
           PIR:F64099
          Length = 154

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 264 SIYNGRSRFQLSFFTWRNWFY--NSGSH-SQPIYTK 362
           ++  GR RF+ S  T R W +   +G H   PIYTK
Sbjct: 106 ALKEGRVRFEKSKITGRKWIHVDPTGGHVLHPIYTK 141


>At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative
           similar to monovalent cation:proton antiporter family 2
           (CPA2) members (see PMID:11500563 for other members)
          Length = 735

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 106 SAMTTFALVLLSYFLVTGGI--IYDVIVEPPSVGST 207
           S  +T A VLL YF++  G+  I++  VE   VG T
Sbjct: 136 SLASTIAFVLLCYFVIQPGVAWIFNNTVEGGQVGDT 171


>At5g19855.1 68418.m02359 expressed protein
          Length = 203

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 261 VNTIRHKCYRSTM-AMFIGRRPNTRWFYNHVIND 163
           VN   +K  R+ +  ++    P   WFYNH+I +
Sbjct: 97  VNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITN 130


>At2g16930.2 68415.m01951 ribosomal protein L27 family protein
           contains Pfam profile PF01016: ribosomal protein L27
          Length = 154

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 264 SIYNGRSRFQLSFFTWRNWFYNS--GSH-SQPIYTK 362
           ++  GR RF+ S  T R W +    G H   PIYTK
Sbjct: 106 ALKEGRVRFEKSKITGRKWIHVDPIGGHVLHPIYTK 141


>At2g16930.1 68415.m01950 ribosomal protein L27 family protein
           contains Pfam profile PF01016: ribosomal protein L27
          Length = 154

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 264 SIYNGRSRFQLSFFTWRNWFYNS--GSH-SQPIYTK 362
           ++  GR RF+ S  T R W +    G H   PIYTK
Sbjct: 106 ALKEGRVRFEKSKITGRKWIHVDPIGGHVLHPIYTK 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,382,652
Number of Sequences: 28952
Number of extensions: 236508
Number of successful extensions: 529
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)