Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A15
         (395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    25   0.27 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   4.4  
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    20   7.7  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 25.0 bits (52), Expect = 0.27
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 165 HPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVIN 326
           HP YFGK G R   ++ NK +C  + L  L   V     + YAS  +   PV N
Sbjct: 303 HPTYFGKTG-RKTVLKTNK-YCNFIILFYLSVFV---ILVYYASLDETPNPVTN 351


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = -3

Query: 261 ESTVCQDLKQGRNPCFFSCGNFSYQVCQSTQGGTCPC 151
           ES +   +  GRN     CG   + V     G  C C
Sbjct: 20  ESCIAVGVGSGRNSAPSICGEHGHCVNLPGVGHRCQC 56


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 237 KQGRNPCFFSCGNF 196
           K GRN  FF  G F
Sbjct: 82  KSGRNKWFFQKGRF 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,315
Number of Sequences: 336
Number of extensions: 1885
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)