Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A15
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...   102   2e-23
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...   101   4e-23
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    23   1.6  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   3.2  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    25   4.3  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   4.3  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   4.3  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    24   7.4  

>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score =  102 bits (245), Expect = 2e-23
 Identities = 49/117 (41%), Positives = 65/117 (55%)
 Frame = +3

Query: 45  RKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKD 224
           RKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR +H+ +N  
Sbjct: 9   RKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPL 68

Query: 225 FCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVEAXXXXXXXXXXXPKQPVIVK 395
           + P +NLD+LWTL+  +AR KY        PVIN++++           P+ PVIV+
Sbjct: 69  WRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPVIVQ 125


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  101 bits (242), Expect = 4e-23
 Identities = 48/117 (41%), Positives = 63/117 (53%)
 Frame = +3

Query: 45  RKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKD 224
           RKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR +H+ +N  
Sbjct: 9   RKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPL 68

Query: 225 FCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVEAXXXXXXXXXXXPKQPVIVK 395
           + P +NLD+LWTLV  + R KY        PVIN++++           P  PVI++
Sbjct: 69  WRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPVIIQ 125


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 22.6 bits (46), Expect(2) = 1.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 132 HHQHYHVHQD 103
           HH H+H H D
Sbjct: 305 HHHHHHSHDD 314



 Score = 22.2 bits (45), Expect(2) = 1.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 141 DGAHHQHYHVH 109
           +G HH H+H H
Sbjct: 297 EGHHHHHHHHH 307


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 192 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVI 323
           + NY ++    FCP L  D    +    +  KY  A   K+ V+
Sbjct: 120 IENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINVV 163


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 192 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARL 284
           M NY  +R  D   +LNL K W  +   AR+
Sbjct: 36  MDNYVWKRRSDGVHILNLGKTWEKLVLAARV 66


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 192 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARL 284
           M NY  +R  D   ++NL K W  +   AR+
Sbjct: 37  MENYVWKRRSDGIHIINLGKTWEKLVLAARV 67


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -3

Query: 297 QMHTLVLPAQRPESTVCQDLK--QGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQ 124
           ++H +     RP+  V    +  +GR+      G  +    +  QGG       +G HH 
Sbjct: 688 KLHFVQKDESRPKEPVVDAAQKHEGRSETLAQPGQQNANQSEEKQGGQNGS---NGGHHH 744

Query: 123 HYHVH 109
           H+H H
Sbjct: 745 HHHHH 749


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 317 RHLAICGRCIL*SCLLRDQSPQ 252
           RH  +CGR I   C+L    PQ
Sbjct: 295 RHCRLCGRVICRFCVLEISLPQ 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,374
Number of Sequences: 5004
Number of extensions: 28144
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)