Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A15
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                    94   4e-20
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         29   1.8  
SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)       27   5.5  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   5.5  
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_44132| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   27   7.3  
SB_22205| Best HMM Match : DUF805 (HMM E-Value=7.7)                    27   7.3  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score = 93.9 bits (223), Expect = 4e-20
 Identities = 43/84 (51%), Positives = 56/84 (66%)
 Frame = +3

Query: 144 RINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVI 323
           R + +  HPGYFGK+GMR++H+ RN    P +NLDK+W+LVSEQ R  Y +  DG VPVI
Sbjct: 67  RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVI 126

Query: 324 NIVEAXXXXXXXXXXXPKQPVIVK 395
           ++V+A           PKQPVIVK
Sbjct: 127 DVVKAGYYKVLGKGLLPKQPVIVK 150


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 165  GTCPC*FCDGAHH--QHYHVHQDAYGACRYD 79
            G CP   CDG+ H   H+  HQ + G  R D
Sbjct: 939  GVCPTPGCDGSGHVSGHWRTHQSSAGCPRND 969


>SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 132 HHQHYHVHQDAYGACRYD 79
           HHQH+H+  D+   C+ D
Sbjct: 132 HHQHHHIKTDSQERCQID 149


>SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)
          Length = 268

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 156 DKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKL 254
           D Y   Y GK G+ N    RN D   V +LD++
Sbjct: 170 DAYLRSYLGKHGVANIRNLRNDDVIIVCDLDEI 202


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 132 HHQHYHVHQDAYGACRYDHDH 70
           HHQH+H H   +    + H+H
Sbjct: 213 HHQHHHHHHHQHNHHHHHHNH 233


>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1780

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 143 QNQHGQVPPWVLWQTW--YEKLPHE 211
           +N +G +PP   W+ W  YE  P+E
Sbjct: 97  RNSYGSLPPRARWRRWGEYETQPNE 121


>SB_44132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 132 HHQHYHVHQDAYGACRYDHDH 70
           +H H+H HQ  Y     +H+H
Sbjct: 30  YHHHHHYHQQQYRKHHNNHNH 50


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -3

Query: 177 STQGGTCPC*F-CDGAHHQHYHVHQDAYGACRYDHDHG 67
           S  GG   C   CDG  H H H H    G   Y  D+G
Sbjct: 108 SNSGGDVDCDDDCDGRSHSHRHAHGGGPG---YGGDYG 142


>SB_22205| Best HMM Match : DUF805 (HMM E-Value=7.7)
          Length = 347

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 26  PPPRRRQEVERTREPWSWSYRQAP 97
           PPP R +       PW  SYRQ P
Sbjct: 82  PPPHRDKTAVICPYPWDASYRQLP 105


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 147  FCDGAHHQHYHVHQD 103
            +C   HH H+H HQD
Sbjct: 1254 WCHHHHHHHHHHHQD 1268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,907,969
Number of Sequences: 59808
Number of extensions: 243615
Number of successful extensions: 821
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)