Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A15
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   110   3e-25
At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   109   7e-25
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    45   2e-05
At2g04620.1 68415.m00470 cation efflux family protein potential ...    29   1.1  
At5g38920.1 68418.m04707 hypothetical protein                          28   2.0  
At2g16100.1 68415.m01846 hypothetical protein                          28   2.6  
At1g21200.1 68414.m02650 expressed protein                             27   3.4  
At3g55760.2 68416.m06196 expressed protein                             27   4.5  
At3g55760.1 68416.m06195 expressed protein                             27   4.5  
At4g26660.1 68417.m03841 expressed protein weak similarity to ph...    27   6.0  
At1g75240.1 68414.m08741 zinc finger homeobox family protein / Z...    27   6.0  
At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to SP...    26   7.9  
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    26   7.9  

>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  110 bits (265), Expect = 3e-25
 Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
 Frame = +3

Query: 36  EEDRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRR 215
           +++RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR +H  R
Sbjct: 6   KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLR 65

Query: 216 NKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVEAXXXXXXXXXXXPK-QPVIV 392
           NK FCP++NLDKLW+LV E  +   A +T   VP+I++ +            P+ +P +V
Sbjct: 66  NKFFCPIVNLDKLWSLVPEDVK---AKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPFVV 122

Query: 393 K 395
           K
Sbjct: 123 K 123


>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  109 bits (262), Expect = 7e-25
 Identities = 55/121 (45%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
 Frame = +3

Query: 36  EEDRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRR 215
           +++RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR +H  R
Sbjct: 6   KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLR 65

Query: 216 NKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVEAXXXXXXXXXXXPK-QPVIV 392
           NK FCP++NLDKLW+LV E  + K  S+ D  VP+I++ +            P+ +P +V
Sbjct: 66  NKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKVLGKGHLPENKPFVV 122

Query: 393 K 395
           K
Sbjct: 123 K 123


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 138 HHRINMDKYHPGYFGK--LGMRNYHMRRNKDFCPVLNLDKLWTLV 266
           H R    +  PG  G   +GMR +H  RNK +C ++NLDKLW++V
Sbjct: 19  HGRFGKHRKLPGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMV 63


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 132 HHQHYHVHQDAYGACRYDHDH 70
           H  H+H H   +  C ++HDH
Sbjct: 597 HDHHHHSHSHKHEECNHNHDH 617


>At5g38920.1 68418.m04707 hypothetical protein
          Length = 192

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 137 PSQNQHGQVPPWVLWQTW 190
           P     G V PW+LW+ W
Sbjct: 12  PQLGDDGMVAPWILWRLW 29


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 134 APSQNQHGQVPPWVLWQTW 190
           +P  +Q  Q+P W+LW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At1g21200.1 68414.m02650 expressed protein
          Length = 443

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 141 DGAHHQHYHVHQDAYGACRYDHDHG 67
           DG  H  Y     AYG CR +H  G
Sbjct: 289 DGDEHDEYEEQHYAYGDCRVNHYGG 313


>At3g55760.2 68416.m06196 expressed protein
          Length = 578

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 182 QTWYEKLPHEKKQGFLPCF 238
           +TWYEK PH    GF  CF
Sbjct: 547 ETWYEKFPH---FGFFHCF 562


>At3g55760.1 68416.m06195 expressed protein
          Length = 578

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 182 QTWYEKLPHEKKQGFLPCF 238
           +TWYEK PH    GF  CF
Sbjct: 547 ETWYEKFPH---FGFFHCF 562


>At4g26660.1 68417.m03841 expressed protein weak similarity to
           phragmoplast-associated kinesin-related protein 1
           [Arabidopsis thaliana] GI:8745333
          Length = 806

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 86  DTTMTMAHVSSQLPVFFLEVAIFTSSPR 3
           DTT +   + SQLP   LE  IF+ SP+
Sbjct: 274 DTTGSGISIRSQLPSCVLEEPIFSESPK 301


>At1g75240.1 68414.m08741 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 309

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 135 AHHQHYHVHQDAYG 94
           +HH+H+H H + YG
Sbjct: 136 SHHRHHHYHHNQYG 149


>At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to
           SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
          Length = 186

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = +3

Query: 9   GRRKYGHLQEEDRKLRGHVSXXXXXXXXXXXXXXXXXNA-GGEHHHRINM 155
           GRRK G  Q+   KL GH                      GGEHH +  M
Sbjct: 124 GRRKKGITQKIKEKLPGHHDQSGQAQAMGGMGSGYDAGGYGGEHHEKKGM 173


>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 207 CGNFSYQVCQSTQGGTCPC*FCDGAHHQHY 118
           C  ++Y++ +ST+     C  C+G +H+ Y
Sbjct: 216 CELYAYEIWKSTRQIHFHCILCNGENHEEY 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,275,563
Number of Sequences: 28952
Number of extensions: 163287
Number of successful extensions: 528
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)