Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A14
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 177 7e-45
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 176 9e-45
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 176 9e-45
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 31 0.65
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.65
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 29 2.6
02_04_0427 - 22809481-22810335 28 4.6
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 28 4.6
10_01_0081 - 1033837-1034090,1034500-1034686,1034713-1034941,103... 28 6.0
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 8.0
03_04_0243 + 19298293-19299117 27 8.0
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 177 bits (430), Expect = 7e-45
Identities = 88/161 (54%), Positives = 115/161 (71%), Gaps = 2/161 (1%)
Frame = +1
Query: 94 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 273
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 274 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 447
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 448 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 570
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 164
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 176 bits (429), Expect = 9e-45
Identities = 88/161 (54%), Positives = 115/161 (71%), Gaps = 2/161 (1%)
Frame = +1
Query: 94 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 273
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 274 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 447
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 448 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 570
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 164
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 176 bits (429), Expect = 9e-45
Identities = 88/161 (54%), Positives = 115/161 (71%), Gaps = 2/161 (1%)
Frame = +1
Query: 94 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 273
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 274 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 447
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 448 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 570
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 164
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 31.1 bits (67), Expect = 0.65
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +1
Query: 307 ALEKL-LPH--IKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV----VIPAH 465
AL+KL LPH ++GN+GF+ + + + D +L++ A P + LS I H
Sbjct: 401 ALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARLISFIADH 460
Query: 466 N--TGLGPEKTSFFQALSI 516
N G PEK S +L +
Sbjct: 461 NKLAGSLPEKMSNLSSLEL 479
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.1 bits (67), Expect = 0.65
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 304 PALEK-LLPHIKGN---VGFVFTRGDLVDV--RDKLLENKVQAPARPGAIAPLSVVIPA 462
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -1
Query: 438 SNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 331
+NG+R G + L+Q++T + ++TGE K ++ +
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFE 98
>02_04_0427 - 22809481-22810335
Length = 284
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 306 WICFKMVLDGFPHHGVFAHEHNAVTTQ*N 220
W F+ + FP GVF HE +T Q N
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRN 151
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 333 DVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*NT 217
D Q+FE+W C ++ GF G F HN Q T
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
>10_01_0081 -
1033837-1034090,1034500-1034686,1034713-1034941,
1035328-1035638
Length = 326
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -1
Query: 522 SGDGKSLEERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKAN 343
S GK L + R +A+ M+ D + + RT RGL + ++ I + G+D+
Sbjct: 219 SEQGKKLRDHVEARREATAMTWKDAARCPDELRTYRGLLERCGKLLSSIQAFTAGDDQQP 278
Query: 342 ISLDV 328
+ V
Sbjct: 279 CQMSV 283
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 115 KSNYFVKIIQLLDEYPKCF 171
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>03_04_0243 + 19298293-19299117
Length = 274
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 455 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVKTKPTFP 336
+ TD+ + APG A A + S SRTS +P + PT P
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSP 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,764
Number of Sequences: 37544
Number of extensions: 375135
Number of successful extensions: 1005
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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