Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A13
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0517 + 9054816-9055655                                           29   1.2  
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965...    27   3.8  
02_05_1001 + 33423562-33424098                                         27   3.8  
01_05_0197 + 19143582-19143618,19143814-19144523                       27   5.0  
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834...    27   6.6  
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335...    27   6.6  
01_06_0630 - 30723903-30724496                                         27   6.6  
07_01_0501 - 3745447-3746244                                           26   8.7  

>03_02_0517 + 9054816-9055655
          Length = 279

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 171 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 305
           +++ H  C+  W  L  S P+C   LPA+     +    + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198


>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
            34897176-34897352,34897426-34897492,34898043-34898101,
            34898188-34898241,34898455-34898604,34898709-34898918,
            34898980-34899039,34899399-34899527,34899616-34899720,
            34899935-34900024,34900630-34900695,34901047-34901115,
            34901348-34901467,34901572-34901634,34901681-34901817,
            34902070-34902160,34902298-34902463,34902700-34904172,
            34905666-34905940,34906322-34906819,34906996-34907145,
            34907840-34907911,34908006-34908266,34908478-34908558,
            34908745-34908996,34909323-34909382,34909602-34909853,
            34910385-34910549,34910589-34910849,34911267-34912307,
            34913398-34913457,34914055-34914165,34914448-34914534,
            34915227-34915300,34915397-34915490,34915644-34915689,
            34916397-34916521
          Length = 2501

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 296  LDIDRAHANYRAITNLKRQFPQLRVFL 376
            + +D   ANYRA+  L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399


>02_05_1001 + 33423562-33424098
          Length = 178

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -2

Query: 315 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 211
           CA   S     E + + S   W PAD+ + WV  ERA
Sbjct: 80  CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116


>01_05_0197 + 19143582-19143618,19143814-19144523
          Length = 248

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +2

Query: 137 VLCYYDSKSYIRES-------QARMLPTDLEPALSFCTHLLYKSAGIQADTYKM 277
           +  +YD KS IR+        + ++   D+E +  F  HL+ +S G+  D +K+
Sbjct: 132 ITSHYDGKSGIRKHILEMTHMENQLRSMDMEISDGFLVHLIMRSLGLNYDPFKI 185


>05_05_0039 -
           21782093-21782320,21782383-21782754,21783031-21783496,
           21784896-21784993,21785179-21785362,21785462-21785574,
           21785942-21786127,21786191-21786364
          Length = 606

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 198 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 311
           RTW+ +F +   CC     S    I  FH+ RIW+ +G
Sbjct: 170 RTWTYIFGA---CC-----STTVFIPSFHNYRIWSFLG 199


>05_01_0425 -
           3347604-3347708,3348394-3348466,3349917-3350581,
           3350609-3351088,3351253-3351534
          Length = 534

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
 Frame = +3

Query: 54  RPWSPSPGYW------R*RLRLPTTQHHLVAKAKSSA 146
           R WSPS G W        R RLPTT+ H   +    A
Sbjct: 433 RAWSPSVGDWLADRPRTLRFRLPTTKDHTTERISGLA 469


>01_06_0630 - 30723903-30724496
          Length = 197

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 183 HVCCLRTWSLLFRSAPIC 236
           HVCCL  W     S P+C
Sbjct: 146 HVCCLDAWLRRNASCPVC 163


>07_01_0501 - 3745447-3746244
          Length = 265

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +2

Query: 173 ESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 319
           E+  R L    E A     H+L  +AG+  D Y  +S     D DR  A
Sbjct: 83  ETGVRALFDAAESAFGAGAHILVANAGLLDDRYPHLSNTPTADFDRTIA 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,898,737
Number of Sequences: 37544
Number of extensions: 177172
Number of successful extensions: 460
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)