Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A13
(382 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 44 6e-05
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 7e-05
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 39 0.001
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.034
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 28 2.2
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 27 5.2
SB_50380| Best HMM Match : PMC2NT (HMM E-Value=2.4) 27 6.8
SB_9718| Best HMM Match : Metallothio_2 (HMM E-Value=1.3) 27 6.8
SB_7559| Best HMM Match : Metallothio_2 (HMM E-Value=2) 27 6.8
SB_45113| Best HMM Match : CemA (HMM E-Value=6) 26 9.0
SB_32905| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_44353| Best HMM Match : GRP (HMM E-Value=4.9) 26 9.0
SB_19172| Best HMM Match : GRP (HMM E-Value=4.9) 26 9.0
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 43.6 bits (98), Expect = 6e-05
Identities = 26/80 (32%), Positives = 39/80 (48%)
Frame = +2
Query: 143 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHAN 322
CYY + S R P D++P L CTH+L+ A + T+K+ EN H
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77
Query: 323 YRAITNLKRQFPQLRVFLTV 382
Y+ I LK+ P+L+ + V
Sbjct: 78 YQRINALKKINPKLKTQIAV 97
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = +2
Query: 140 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 319
+CYY + S R P D++P L CTH+++ + + T+ M +N D D
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL--- 462
Query: 320 NYRAITNLKRQFPQLRVFLTV 382
Y+ I LK+ P+L+ + V
Sbjct: 463 -YKRINALKKINPKLKTQIAV 482
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 43.2 bits (97), Expect = 7e-05
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +2
Query: 140 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 319
+CY+ + + R + LP D++P L CTH++Y A I T K+ + N D
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----R 453
Query: 320 NYRAITNLKRQFPQLRVFLTV 382
Y+ I +LK + P L+ L V
Sbjct: 454 LYKEINDLKLKNPSLKTLLAV 474
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 39.1 bits (87), Expect = 0.001
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +2
Query: 140 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAH 316
+CY+ + S R+ +A+ P D+ PA CTHL+Y A I Q + M N+ D+ +
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75
Query: 317 ANYRAITNLKRQFPQLRVFLTV 382
+ A LK++ P+L+ L V
Sbjct: 76 PRFNA---LKQKNPELKTLLAV 94
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 34.3 bits (75), Expect = 0.034
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 140 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNEN 295
+CYY + + R A+ P +++P+L CTH++Y A + AD K+ N
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN 73
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 66 PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 206
P P R R PT H K + T T R ++ +KHV +RT+
Sbjct: 316 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 362
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 66 PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 206
P P R R PT H K + T T R ++ +KHV +RT+
Sbjct: 983 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 1029
>SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +3
Query: 120 LVAKAKSSATMTARAISENLKHVCCLRTWSLLF 218
LVA+ K++ TAR + + +H+ + W++++
Sbjct: 65 LVARCKNALIQTARTVVKRHRHMIAQQRWTVVY 97
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 285 SETILYVSAWMPADLYSRWVQNERAGSKSVGSI 187
+ T++ +AW D Y W+Q + G+ V S+
Sbjct: 398 ASTVIIDTAWCAGDSYDCWLQVDLGGTHCVTSV 430
>SB_50380| Best HMM Match : PMC2NT (HMM E-Value=2.4)
Length = 362
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 252 ASKLTHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 362
A+ L + ++ +W L+G L + Q KDS+LN
Sbjct: 230 ANNLYSVDYYVKKVVWDLMGEVLHYKHQQGTKDSWLN 266
>SB_9718| Best HMM Match : Metallothio_2 (HMM E-Value=1.3)
Length = 279
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 252 ASKLTHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 362
A+ L + ++ +W L+G L + Q KDS+LN
Sbjct: 147 ANNLYSVDYYVKKVVWDLMGEVLHYKHQQGTKDSWLN 183
>SB_7559| Best HMM Match : Metallothio_2 (HMM E-Value=2)
Length = 532
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 252 ASKLTHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 362
A+ L + ++ +W L+G L + Q KDS+LN
Sbjct: 400 ANNLYSVDYYVKKVVWDLMGEVLHYKHQQGTKDSWLN 436
>SB_45113| Best HMM Match : CemA (HMM E-Value=6)
Length = 363
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 252 ASKLTHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 362
A+ L + ++ +W L+G L + Q KDS+LN
Sbjct: 230 ANNLHGVDYYVKKVVWDLMGEVLEYKHQQGTKDSWLN 266
>SB_32905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 120 LVAKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICCTNLP 251
L+ KA ++T T S+ V CLR + L R+ P C N+P
Sbjct: 110 LMGKAGRASTPTCARRSD----VHCLREYVHLMRTNPDLCVNIP 149
>SB_44353| Best HMM Match : GRP (HMM E-Value=4.9)
Length = 361
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 252 ASKLTHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 362
A+ L + ++ +W L+G L + Q KDS+LN
Sbjct: 229 ANNLYGVDYYVKKVVWDLMGEVLEYKHQQGTKDSWLN 265
>SB_19172| Best HMM Match : GRP (HMM E-Value=4.9)
Length = 278
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 252 ASKLTHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 362
A+ L + ++ +W L+G L + Q KDS+LN
Sbjct: 146 ANNLYGVDYYVKKVVWDLMGEVLEYKHQQGTKDSWLN 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,079,857
Number of Sequences: 59808
Number of extensions: 197440
Number of successful extensions: 536
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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