Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A13
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    38   0.002
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    31   0.37 
AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical ...    29   1.1  
AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical ...    29   1.1  
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    27   3.4  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    27   3.4  
AL110490-9|CAB54453.2|  607|Caenorhabditis elegans Hypothetical ...    27   4.5  
AF039650-1|AAC14022.3|  607|Caenorhabditis elegans acetylcholine...    27   4.5  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    27   4.5  
AL110490-8|CAB54444.2|  602|Caenorhabditis elegans Hypothetical ...    26   7.9  
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    26   7.9  
AF025379-1|AAC14017.1|  602|Caenorhabditis elegans acetylcholine...    26   7.9  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    26   7.9  

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +2

Query: 143 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRA-HA 319
           CY+ + +  R+ +A+ +P D  P L  CTH+L+    + AD         +L  D A   
Sbjct: 57  CYFTNWAQYRQGRAKFVPEDYTPGL--CTHILFAFGWMNADYTVRAYDPADLPNDWAGEG 114

Query: 320 NYRAITNLKRQFPQLRVFLT 379
            YR +  LK    QL+  L+
Sbjct: 115 MYRRVNKLKVTDTQLKTLLS 134


>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +2

Query: 179 QARMLPTDLEPALSFCTHLLYKSAGIQADT----YKMVSLNENLDIDRAHANYRAITNLK 346
           + R+ P  L+  ++ CTHL+Y S  I  DT    Y +  +    DID    N R    L+
Sbjct: 37  KTRLSPNLLQN-ITTCTHLVYGSIPIDRDTGYPQYSVSDVESGYDID----NIRTFMRLR 91

Query: 347 RQFPQLRVFLTV 382
           +  P  ++ + V
Sbjct: 92  KYHPNAKLLMGV 103


>AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical
           protein Y73F8A.9 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 266 CQLGCRQICTADGCRTKEQAPSP 198
           CQ  C+Q C    C T+  AP+P
Sbjct: 103 CQSSCQQTCQTSSCYTQIAAPAP 125


>AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical
           protein Y73F8A.8 protein.
          Length = 420

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 266 CQLGCRQICTADGCRTKEQAPSP 198
           CQ  C+Q C    C T+  AP+P
Sbjct: 104 CQSSCQQTCQTSSCYTQIAAPAP 126


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 221 FCTHLLYKSAGIQADTYKMVSLNENLDI 304
           F  +L  K  GI A  YK+VSLN  L++
Sbjct: 511 FSRYLHTKQRGIPAKVYKVVSLNSCLEV 538


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 221 FCTHLLYKSAGIQADTYKMVSLNENLDI 304
           F  +L  K  GI A  YK+VSLN  L++
Sbjct: 507 FSRYLHTKQRGIPAKVYKVVSLNSCLEV 534


>AL110490-9|CAB54453.2|  607|Caenorhabditis elegans Hypothetical
           protein Y48B6A.8 protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 288 LSETILYVSAWMPADLYS 235
           +SE  LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133


>AF039650-1|AAC14022.3|  607|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 288 LSETILYVSAWMPADLYS 235
           +SE  LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 242 CTADGCRTKEQAPSP*AAYVLEIL*YSSCCHSSRGLCFGY 123
           C+ + C     AP    +Y      YSSCC+S+   C GY
Sbjct: 65  CSCNPCNGGGCAPR--CSYCPNNFGYSSCCNSNNFSCCGY 102


>AL110490-8|CAB54444.2|  602|Caenorhabditis elegans Hypothetical
           protein Y48B6A.7 protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 288 LSETILYVSAWMPADLYS 235
           +SE  LY++ W PAD Y+
Sbjct: 111 ISEDCLYLNIWAPADAYN 128


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 123 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 245
           +AK    AT  A+    +SE L+H   + TW    R+ P+  +N
Sbjct: 56  IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99


>AF025379-1|AAC14017.1|  602|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 288 LSETILYVSAWMPADLYS 235
           +SE  LY++ W PAD Y+
Sbjct: 111 ISEDCLYLNIWAPADAYN 128


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 123 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 245
           +AK    AT  A+    +SE L+H   + TW    R+ P+  +N
Sbjct: 56  IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,085,799
Number of Sequences: 27780
Number of extensions: 142841
Number of successful extensions: 379
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)