Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A12
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   3.2  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    23   4.2  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    23   4.2  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    23   5.6  
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    23   5.6  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    23   7.4  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    23   7.4  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    23   7.4  

>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 12  AAALL-DYGFYLLNIDCVVHS 71
           AA+LL D   YL N DC+VH+
Sbjct: 77  AASLLEDKEAYLRNQDCIVHA 97


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 14   RRLTRLRILPAEHRLCC 64
            RRL RLR+  AE R+ C
Sbjct: 1451 RRLWRLRVTAAEIRIIC 1467


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 33  GFYLLNIDCVVHSVAVYEEAL 95
           GFY  NID V+++   Y E +
Sbjct: 241 GFYAKNIDSVINNRCEYSEEI 261


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 8   ARRRLTRLRILPAEHRLCCAQCRRLR 85
           A+  +T++     E +L C  C+R+R
Sbjct: 426 AKTDITKIFDFETEQKLSCLSCKRVR 451


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 119 PVHAAERRQRLLVDGDTVHN 60
           P  AAE++QRL+ + + V N
Sbjct: 99  PETAAEKKQRLVAEAEAVAN 118


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 78  VYEEALSALRRVYGRSSLH-VATAQE 152
           +  + L ALR+V  RSS H V +AQE
Sbjct: 304 IQNDCLFALRQVSKRSSYHSVFSAQE 329


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 27  DYGFYLLNIDCVVHSVAVYEEALSALR-RVY 116
           D GF+L   D  +++V V  E  +ALR R+Y
Sbjct: 292 DLGFHLDPRDWHINNVPVVSEEQAALRSRIY 322


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 36  FYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAY 164
           F LLN D +V++ A   ++L    +VYG S        +++ Y
Sbjct: 207 FTLLNSDSLVNTSASCLQSLLDGEKVYGTSDKDFYVPSKNVEY 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.148    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,463
Number of Sequences: 5004
Number of extensions: 4994
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)