Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A12
         (192 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38091| Best HMM Match : Viral_Rep (HMM E-Value=5.1)                 74   2e-14
SB_8454| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=6.5)            74   2e-14
SB_2152| Best HMM Match : EGF (HMM E-Value=0)                          33   0.037
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)                  30   0.26 
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)                 26   5.5  
SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)          25   9.7  

>SB_38091| Best HMM Match : Viral_Rep (HMM E-Value=5.1)
          Length = 156

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/62 (56%), Positives = 45/62 (72%)
 Frame = +3

Query: 6   RHAAALLDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALYVLEY 185
           + A  L+DYGFYLLN+D +  SV VY+ A      V+G ++LHVATA EDLAYA+YV EY
Sbjct: 18  KFADVLVDYGFYLLNVDSIHLSVQVYKTAFRIRSEVFGVNNLHVATAHEDLAYAMYVHEY 77

Query: 186 SS 191
           S+
Sbjct: 78  ST 79


>SB_8454| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=6.5)
          Length = 321

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/62 (56%), Positives = 45/62 (72%)
 Frame = +3

Query: 6   RHAAALLDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALYVLEY 185
           + A  L+DYGFYLLN+D +  SV VY+ A      V+G ++LHVATA EDLAYA+YV EY
Sbjct: 253 KFADVLVDYGFYLLNVDSIHLSVQVYKTAFRIRSEVFGVNNLHVATAHEDLAYAMYVHEY 312

Query: 186 SS 191
           S+
Sbjct: 313 ST 314


>SB_2152| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1603

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +2

Query: 35   ILPAEHRLCCAQCRRLRGGAVGAPP 109
            ILP +HR  C  CRRL G A  APP
Sbjct: 1238 ILPRQHR--CVTCRRLEGRAYAAPP 1260


>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
          Length = 253

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 77  RLRGGAVGAPPRVRAQQPARGDGAGGPRVRA 169
           R  GG++  P R R++ P RG   G PR R+
Sbjct: 177 RRGGGSMSPPRRSRSRSPRRGGRGGSPRQRS 207


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 32   RILPAEHRLCCAQCRRLRGGAVGAPPRV 115
            R+LP  HR CC Q  R  G AV    RV
Sbjct: 2054 RVLPYAHRECCKQRVRKYGLAVNLRRRV 2081


>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
          Length = 159

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 98  GAPPRVRAQQPARGDGAGGPRVRALRAG 181
           G P +V   QP    GAGG R    R+G
Sbjct: 72  GRPMKVNQAQPRGERGAGGSRAGGYRSG 99


>SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)
          Length = 909

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 54  DCVVHSVAVYEEALSALRRVYGRSSLHVATAQED 155
           DCV+    VY +++ +  RVY  S L  A    D
Sbjct: 485 DCVLSQARVYRDSVLSQARVYRDSVLSQARVYRD 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.148    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,210
Number of Sequences: 59808
Number of extensions: 48188
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 16,821,457
effective HSP length: 42
effective length of database: 14,309,521
effective search space used: 300499941
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)