Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A12
(192 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86981-1|BAA13217.1| 681|Homo sapiens KIAA0228 protein protein. 77 8e-15
BC018121-1|AAH18121.1| 585|Homo sapiens amyloid beta precursor ... 77 8e-15
AF017782-1|AAC83973.1| 585|Homo sapiens PAT1 protein. 75 4e-14
AK075040-1|BAC11368.1| 214|Homo sapiens protein ( Homo sapiens ... 31 0.65
Z46389-1|CAA86523.1| 380|Homo sapiens vasodilator-stimulated ph... 29 3.5
X98534-1|CAA67147.2| 378|Homo sapiens vasodilator-stimulated ph... 29 3.5
BC038224-1|AAH38224.1| 380|Homo sapiens vasodilator-stimulated ... 29 3.5
BC026019-1|AAH26019.1| 380|Homo sapiens vasodilator-stimulated ... 29 3.5
BC050291-1|AAH50291.1| 547|Homo sapiens glucocorticoid induced ... 28 4.6
BC002907-1|AAH02907.1| 188|Homo sapiens transmembrane protein 1... 28 4.6
AK000519-1|BAA91225.1| 188|Homo sapiens protein ( Homo sapiens ... 28 6.1
>D86981-1|BAA13217.1| 681|Homo sapiens KIAA0228 protein protein.
Length = 681
Score = 77.4 bits (182), Expect = 8e-15
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +3
Query: 6 RHAAALLDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALYVLEY 185
+++ LLDYGFYLLN+D + SVA+Y+ AL + V+G ++HVATA EDLAY+ YV +Y
Sbjct: 382 KYSDTLLDYGFYLLNVDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQY 441
Query: 186 SS 191
SS
Sbjct: 442 SS 443
>BC018121-1|AAH18121.1| 585|Homo sapiens amyloid beta precursor
protein (cytoplasmic tail) binding protein 2 protein.
Length = 585
Score = 77.4 bits (182), Expect = 8e-15
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +3
Query: 6 RHAAALLDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALYVLEY 185
+++ LLDYGFYLLN+D + SVA+Y+ AL + V+G ++HVATA EDLAY+ YV +Y
Sbjct: 286 KYSDTLLDYGFYLLNVDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQY 345
Query: 186 SS 191
SS
Sbjct: 346 SS 347
>AF017782-1|AAC83973.1| 585|Homo sapiens PAT1 protein.
Length = 585
Score = 74.9 bits (176), Expect = 4e-14
Identities = 33/62 (53%), Positives = 46/62 (74%)
Frame = +3
Query: 6 RHAAALLDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALYVLEY 185
+++ LLDYG YLLN+D + SVA+Y+ AL + V+G ++HVATA EDLAY+ YV +Y
Sbjct: 286 KYSDTLLDYGLYLLNVDNICQSVAIYQAALDIRQSVFGGRNIHVATAHEDLAYSCYVHQY 345
Query: 186 SS 191
SS
Sbjct: 346 SS 347
>AK075040-1|BAC11368.1| 214|Homo sapiens protein ( Homo sapiens
cDNA FLJ90559 fis, clone OVARC1001049, weakly similar to
TRANSCRIPTION FACTOR HES-1 (C-HAIRY1). ).
Length = 214
Score = 31.1 bits (67), Expect = 0.65
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 11 RRRLTRLRILPAEHRLCCA---QCRRLRG--GAVGAPPRVRAQQPARGDGAGGPRVRALR 175
R R R + PA R CRR RG GAPPR+ + RG G G V A R
Sbjct: 91 RGRRPRAPVTPARRRTSLPAPLSCRR-RGLPPEQGAPPRLLGEPRPRGPGGLGHAVAAHR 149
Query: 176 AG 181
AG
Sbjct: 150 AG 151
>Z46389-1|CAA86523.1| 380|Homo sapiens vasodilator-stimulated
phosphoprotein (VASP) protein.
Length = 380
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 86 GGAVGAPPRVRAQQPARGDGAGGPRVRALRAGVLL 190
GG APP AQ P G GAG P + A AG L
Sbjct: 202 GGPPPAPPLPAAQGPG-GGGAGAPGLAAAIAGAKL 235
>X98534-1|CAA67147.2| 378|Homo sapiens vasodilator-stimulated
phosphoprotein protein.
Length = 378
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 86 GGAVGAPPRVRAQQPARGDGAGGPRVRALRAGVLL 190
GG APP AQ P G GAG P + A AG L
Sbjct: 200 GGPPPAPPLPAAQGPG-GGGAGAPGLAAAIAGAKL 233
>BC038224-1|AAH38224.1| 380|Homo sapiens vasodilator-stimulated
phosphoprotein protein.
Length = 380
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 86 GGAVGAPPRVRAQQPARGDGAGGPRVRALRAGVLL 190
GG APP AQ P G GAG P + A AG L
Sbjct: 202 GGPPPAPPLPAAQGPG-GGGAGAPGLAAAIAGAKL 235
>BC026019-1|AAH26019.1| 380|Homo sapiens vasodilator-stimulated
phosphoprotein protein.
Length = 380
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 86 GGAVGAPPRVRAQQPARGDGAGGPRVRALRAGVLL 190
GG APP AQ P G GAG P + A AG L
Sbjct: 203 GGPPPAPPLPAAQGPG-GGGAGAPGLAAAIAGAKL 236
>BC050291-1|AAH50291.1| 547|Homo sapiens glucocorticoid induced
transcript 1 protein.
Length = 547
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 74 RRLRGGAVGAPPRVRAQQPARGDGAGG 154
+R+R A G+PP V A G G GG
Sbjct: 21 QRMRRSAAGSPPAVAAAGSGNGAGGGG 47
>BC002907-1|AAH02907.1| 188|Homo sapiens transmembrane protein 160
protein.
Length = 188
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 30 YGFYLLNIDCVVHSVAVYEEALSALR 107
YGF+LL CVV A Y +L+ALR
Sbjct: 100 YGFFLLGGLCVVWGSASYAVSLAALR 125
>AK000519-1|BAA91225.1| 188|Homo sapiens protein ( Homo sapiens
cDNA FLJ20512 fis, clone KAT09739. ).
Length = 188
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 30 YGFYLLNIDCVVHSVAVYEEALSALR 107
YGF+LL CVV A Y L+ALR
Sbjct: 100 YGFFLLGGLCVVWGSASYAVGLAALR 125
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.313 0.148 0.518
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,128
Number of Sequences: 237096
Number of extensions: 232137
Number of successful extensions: 1140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 76,859,062
effective HSP length: 43
effective length of database: 66,663,934
effective search space used: 1333278680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -