Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A12
(192 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY058334-1|AAL13563.1| 686|Drosophila melanogaster GH10889p pro... 77 3e-15
AE014298-910|AAF46174.1| 686|Drosophila melanogaster CG10695-PA... 77 3e-15
AE013599-3554|AAF46965.2| 1073|Drosophila melanogaster CG30188-P... 28 1.6
AY262004-1|AAP57097.1| 833|Drosophila melanogaster TRP channel ... 27 4.8
AE014296-2365|AAF49752.2| 833|Drosophila melanogaster CG5842-PA... 27 4.8
BT023782-1|AAZ41791.1| 779|Drosophila melanogaster LD11946p pro... 26 6.3
Y17111-1|CAA76635.1| 1365|Drosophila melanogaster Nup154 protein. 26 8.4
AY102651-1|AAM27480.1| 602|Drosophila melanogaster GH01517p pro... 26 8.4
AF160944-1|AAD46884.1| 1365|Drosophila melanogaster Nup154 protein. 26 8.4
AF051398-1|AAC05386.1| 1365|Drosophila melanogaster nucleoporin ... 26 8.4
AF051397-1|AAC05385.1| 1349|Drosophila melanogaster nucleoporin ... 26 8.4
AF051396-2|AAC06248.1| 1349|Drosophila melanogaster nucleoporin ... 26 8.4
AF051396-1|AAC06247.1| 1365|Drosophila melanogaster nucleoporin ... 26 8.4
AE014297-1927|AAF55121.3| 602|Drosophila melanogaster CG33485-P... 26 8.4
AE014134-2012|AAF53050.2| 1123|Drosophila melanogaster CG4579-PB... 26 8.4
AE014134-2011|AAF53051.1| 1365|Drosophila melanogaster CG4579-PA... 26 8.4
>AY058334-1|AAL13563.1| 686|Drosophila melanogaster GH10889p
protein.
Length = 686
Score = 77.0 bits (181), Expect = 3e-15
Identities = 34/62 (54%), Positives = 46/62 (74%)
Frame = +3
Query: 6 RHAAALLDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALYVLEY 185
++ ALLDYGF+LLN+D V SV +Y+EAL+ R ++G + HVA A EDL+YA YV EY
Sbjct: 374 KYGDALLDYGFFLLNVDSVFQSVNIYKEALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEY 433
Query: 186 SS 191
S+
Sbjct: 434 ST 435
>AE014298-910|AAF46174.1| 686|Drosophila melanogaster CG10695-PA
protein.
Length = 686
Score = 77.0 bits (181), Expect = 3e-15
Identities = 34/62 (54%), Positives = 46/62 (74%)
Frame = +3
Query: 6 RHAAALLDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALYVLEY 185
++ ALLDYGF+LLN+D V SV +Y+EAL+ R ++G + HVA A EDL+YA YV EY
Sbjct: 374 KYGDALLDYGFFLLNVDSVFQSVNIYKEALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEY 433
Query: 186 SS 191
S+
Sbjct: 434 ST 435
>AE013599-3554|AAF46965.2| 1073|Drosophila melanogaster CG30188-PA
protein.
Length = 1073
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 104 PPRVRAQQPARGDGAGGPRVRALRAG 181
PP + + P RG G GG V A AG
Sbjct: 925 PPNIYTRIPGRGGGGGGATVTAAGAG 950
>AY262004-1|AAP57097.1| 833|Drosophila melanogaster TRP channel
protein nanchung protein.
Length = 833
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 114 YGRSSLHVATAQEDLAYALYVLE 182
YG S LH+A ED A Y+L+
Sbjct: 179 YGESVLHIAIVNEDPAMVKYLLD 201
>AE014296-2365|AAF49752.2| 833|Drosophila melanogaster CG5842-PA
protein.
Length = 833
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 114 YGRSSLHVATAQEDLAYALYVLE 182
YG S LH+A ED A Y+L+
Sbjct: 179 YGESVLHIAIVNEDPAMVKYLLD 201
>BT023782-1|AAZ41791.1| 779|Drosophila melanogaster LD11946p
protein.
Length = 779
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 8 ARRRLTRLRILPAEHRLCCAQCRRLRGGAVGAPPRVR 118
ARRR +L + CC+ RR APPR+R
Sbjct: 14 ARRRSPSRTLLSSSSTRCCSATRRT---MASAPPRIR 47
>Y17111-1|CAA76635.1| 1365|Drosophila melanogaster Nup154 protein.
Length = 1365
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 24 LDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALY 173
L G +L ++ + V + L+A+ + L ATA ++L YALY
Sbjct: 1113 LSNGIFLKELEDKLDIARVQKSVLAAMTEL-ASDKLEAATAVKELNYALY 1161
>AY102651-1|AAM27480.1| 602|Drosophila melanogaster GH01517p
protein.
Length = 602
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 62 CAQCRRLRGGAVGAPPRVRAQQPARGDGAGGP 157
C L G A+ PP +R+ + A G+ G P
Sbjct: 510 CRWIAALLGAALATPPPLRSTRRATGERPGSP 541
>AF160944-1|AAD46884.1| 1365|Drosophila melanogaster Nup154 protein.
Length = 1365
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 24 LDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALY 173
L G +L ++ + V + L+A+ + L ATA ++L YALY
Sbjct: 1113 LSNGIFLKELEDKLDIARVQKSVLAAMTEL-ASDKLEAATAVKELNYALY 1161
>AF051398-1|AAC05386.1| 1365|Drosophila melanogaster nucleoporin
protein.
Length = 1365
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 24 LDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALY 173
L G +L ++ + V + L+A+ + L ATA ++L YALY
Sbjct: 1113 LSNGIFLKELEDKLDIARVQKSVLAAMTEL-ASDKLEAATAVKELNYALY 1161
>AF051397-1|AAC05385.1| 1349|Drosophila melanogaster nucleoporin
protein.
Length = 1349
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 24 LDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALY 173
L G +L ++ + V + L+A+ + L ATA ++L YALY
Sbjct: 1097 LSNGIFLKELEDKLDIARVQKSVLAAMTEL-ASDKLEAATAVKELNYALY 1145
>AF051396-2|AAC06248.1| 1349|Drosophila melanogaster nucleoporin
protein.
Length = 1349
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 24 LDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALY 173
L G +L ++ + V + L+A+ + L ATA ++L YALY
Sbjct: 1097 LSNGIFLKELEDKLDIARVQKSVLAAMTEL-ASDKLEAATAVKELNYALY 1145
>AF051396-1|AAC06247.1| 1365|Drosophila melanogaster nucleoporin
protein.
Length = 1365
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 24 LDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALY 173
L G +L ++ + V + L+A+ + L ATA ++L YALY
Sbjct: 1113 LSNGIFLKELEDKLDIARVQKSVLAAMTEL-ASDKLEAATAVKELNYALY 1161
>AE014297-1927|AAF55121.3| 602|Drosophila melanogaster CG33485-PA
protein.
Length = 602
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 62 CAQCRRLRGGAVGAPPRVRAQQPARGDGAGGP 157
C L G A+ PP +R+ + A G+ G P
Sbjct: 510 CRWIAALLGAALATPPPLRSTRRATGERPGSP 541
>AE014134-2012|AAF53050.2| 1123|Drosophila melanogaster CG4579-PB,
isoform B protein.
Length = 1123
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 24 LDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALY 173
L G +L ++ + V + L+A+ + L ATA ++L YALY
Sbjct: 871 LSNGIFLKELEDKLDIARVQKSVLAAMTEL-ASDKLEAATAVKELNYALY 919
>AE014134-2011|AAF53051.1| 1365|Drosophila melanogaster CG4579-PA,
isoform A protein.
Length = 1365
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 24 LDYGFYLLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQEDLAYALY 173
L G +L ++ + V + L+A+ + L ATA ++L YALY
Sbjct: 1113 LSNGIFLKELEDKLDIARVQKSVLAAMTEL-ASDKLEAATAVKELNYALY 1161
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.313 0.148 0.518
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,080,158
Number of Sequences: 53049
Number of extensions: 82204
Number of successful extensions: 318
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 24,988,368
effective HSP length: 43
effective length of database: 22,707,261
effective search space used: 454145220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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