Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A12
(192 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 28 1.1
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 28 1.1
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 28 1.1
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 28 1.1
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 27 2.4
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 27 2.4
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 27 2.4
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 27 2.4
AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical ... 26 3.2
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 25 5.6
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 25 5.6
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 25 5.6
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z68302-7|CAH60770.1| 495|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z68302-6|CAA92635.2| 510|Caenorhabditis elegans Hypothetical pr... 25 9.8
AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear recep... 25 9.8
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
protein K04B12.1 protein.
Length = 1764
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 50 HRLCCAQCRRLRGGAVGAPPRVRAQQPARGDGAGGPRVR 166
+R C +C + AV PPR+ +P G GG ++
Sbjct: 729 NRQCSHECHESKATAVCDPPRIDKFEPTSGPIEGGTIIK 767
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
glp-1 protein.
Length = 1492
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +2
Query: 86 GGAVGAPPRVRAQQPARG---DGAGGPR 160
GGA GA + +A QP+RG GAG PR
Sbjct: 762 GGAPGARAQQQAYQPSRGAAGAGAGAPR 789
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +2
Query: 86 GGAVGAPPRVRAQQPARG---DGAGGPR 160
GGA GA + +A QP+RG GAG PR
Sbjct: 782 GGAPGARAQQQAYQPSRGAAGAGAGAPR 809
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 50 HRLCCAQCRRLRGGAVGAPPRVRAQQPARGDGAGGPRVR 166
+R C +C + AV PPR+ +P G GG ++
Sbjct: 731 NRQCSHECHESKATAVCDPPRIDKFEPTSGPIEGGTIIK 769
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 59 CCAQCRRLRGGAVGAPPRVRAQQPARGD 142
C + C R R A PP + QP GD
Sbjct: 286 CSSSCHRYRTRACTVPPPMNGGQPCFGD 313
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 59 CCAQCRRLRGGAVGAPPRVRAQQPARGD 142
C + C R R A PP + QP GD
Sbjct: 314 CSSSCHRYRTRACTVPPPMNGGQPCFGD 341
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 59 CCAQCRRLRGGAVGAPPRVRAQQPARGD 142
C + C R R A PP + QP GD
Sbjct: 286 CSSSCHRYRTRACTVPPPMNGGQPCFGD 313
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 59 CCAQCRRLRGGAVGAPPRVRAQQPARGD 142
C + C R R A PP + QP GD
Sbjct: 286 CSSSCHRYRTRACTVPPPMNGGQPCFGD 313
>AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical
protein Y75B8A.8 protein.
Length = 715
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 86 GGAVGAPPRVRAQQPARGDGAG 151
GG G PPR QQP + G G
Sbjct: 16 GGGGGGPPRGPPQQPPQPQGGG 37
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 98 GAPPRVRAQQPARGDGAGGPRVRALRAG 181
G PR+RA DG GG R RAG
Sbjct: 301 GPQPRIRADDYNSDDGYGGSRGGGDRAG 328
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 98 GAPPRVRAQQPARGDGAGGPRVRALRAG 181
G PR+RA DG GG R RAG
Sbjct: 338 GPQPRIRADDYNSDDGYGGSRGGGDRAG 365
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 98 GAPPRVRAQQPARGDGAGGPRVRALRAG 181
G PR+RA DG GG R RAG
Sbjct: 322 GPQPRIRADDYNSDDGYGGSRGGGDRAG 349
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 98 GAPPRVRAQQPARGDGAGG 154
G P RV+ + +GDGAGG
Sbjct: 167 GRPGRVKRRTLRKGDGAGG 185
>Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical
protein F32B6.1 protein.
Length = 492
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +2
Query: 47 EHRLCCAQCRRLRGGAVGAPP---RVRAQQPARGDGAGGP 157
EHR C CR + VG P + + A+ G GGP
Sbjct: 97 EHRNVCRSCRLKKCFEVGMNPDSVQNERDRNAKNGGMGGP 136
>Z68302-7|CAH60770.1| 495|Caenorhabditis elegans Hypothetical
protein ZK792.4b protein.
Length = 495
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 102 LRRVYGRSSLHVATAQEDLAYALYVLE 182
LR G + LH+A L ALY+LE
Sbjct: 295 LRDTRGNTPLHLAAMNNHLDAALYMLE 321
>Z68302-6|CAA92635.2| 510|Caenorhabditis elegans Hypothetical
protein ZK792.4a protein.
Length = 510
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 102 LRRVYGRSSLHVATAQEDLAYALYVLE 182
LR G + LH+A L ALY+LE
Sbjct: 310 LRDTRGNTPLHLAAMNNHLDAALYMLE 336
>AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear receptor
NHR-4 protein.
Length = 492
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +2
Query: 47 EHRLCCAQCRRLRGGAVGAPP---RVRAQQPARGDGAGGP 157
EHR C CR + VG P + + A+ G GGP
Sbjct: 97 EHRNVCRSCRLKKCFEVGMNPDSVQNERDRNAKNGGMGGP 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.313 0.148 0.518
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,292
Number of Sequences: 27780
Number of extensions: 34105
Number of successful extensions: 146
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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