Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A12
         (192 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   3.1  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              19   4.1  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    19   5.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    19   5.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   5.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     18   9.4  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 65  AQCRRLRGGAVGAPPRVRAQQP 130
           A C R+     G PP  R  +P
Sbjct: 478 AVCGRIENTIQGLPPPYRLNKP 499


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 42  LLNIDCVVHSVAVYEEALSALRRVYGRSSLHVATAQE 152
           +++  CV  S    +E  S L  V       + TAQ+
Sbjct: 6   IISAICVCVSAMTLDELKSGLHTVQSVCMKEIGTAQQ 42


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 14 RRLTRLRILPAEHRLCCAQ 70
          R LTR R +   H LC  +
Sbjct: 31 RYLTRRRRIEIAHALCLTE 49


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 14 RRLTRLRILPAEHRLCCAQ 70
          R LTR R +   H LC  +
Sbjct: 31 RYLTRRRRIEIAHALCLTE 49


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 14  RRLTRLRILPAEHRLCCAQ 70
           R LTR R +   H LC  +
Sbjct: 293 RYLTRRRRIEIAHALCLTE 311


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 6   RHAAALLDYGFYLL 47
           +HAA L  Y F ++
Sbjct: 358 KHAAMLYQYNFNII 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.148    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,153
Number of Sequences: 438
Number of extensions: 358
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.6 bits)