Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A12
         (192 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT...    28   0.99 
At4g11760.1 68417.m01875 expressed protein                             27   1.3  
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat...    26   4.0  
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...    26   4.0  
At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1) iden...    25   7.0  

>At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT22)
           / HD-ZIP protein 22 identical to homeobox-leucine zipper
           protein HAT22 (HD-ZIP protein 22) (SP:P46604)
           [Arabidopsis thaliana]
          Length = 278

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 38  LPAEHRLCCAQCRRLRGGAVGAPPRVRAQQPARG 139
           +PA     C  C RL GG VG       ++ A+G
Sbjct: 224 MPAATLTMCPSCERLGGGGVGGDTTAVDEETAKG 257


>At4g11760.1 68417.m01875 expressed protein
          Length = 96

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 47  EHRLCCAQCRRLRGGAVGAPPRVRAQQPARG 139
           +  LC + C++  GG VG   R +  QP++G
Sbjct: 49  DSELCASLCKKKSGGGVGT-CRTKTTQPSKG 78


>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative strong
           similarity to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 995

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 53  RLCCAQCRRLRGGAVGAPPRVRAQ 124
           R+C A  R   GG+ G+P  +RAQ
Sbjct: 57  RVCSASTRWSHGGSWGSPASLRAQ 80


>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 134 RGDGAGGPRVRALRAG 181
           RG G GGPR R  RAG
Sbjct: 22  RGGGRGGPRGRGRRAG 37


>At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1)
           identical to AKT1 [Arabidopsis thaliana]
           gi|563112|gb|AAA96810; member of the 1 pore, 6
           transmembrane (1P/6TM- Shaker-type) K+ channel family,
           PMID:11500563
          Length = 857

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 108 RVYGRSSLHVATAQEDLAYALYVLE 182
           R  G S+LH A  +E++    Y+LE
Sbjct: 645 RATGTSALHTAVCEENIEMVKYLLE 669


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.148    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,128
Number of Sequences: 28952
Number of extensions: 31349
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,070,560
effective HSP length: 43
effective length of database: 10,825,624
effective search space used: 216512480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)