Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A11
(497 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 272 2e-72
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 271 5e-72
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 243 2e-63
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 213 1e-54
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 191 6e-48
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 185 6e-46
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 166 2e-40
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 149 3e-35
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 142 4e-33
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 116 2e-25
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 116 4e-25
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 104 1e-21
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 100 2e-20
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 78 1e-13
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 66 4e-10
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 66 5e-10
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 64 2e-09
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 58 1e-07
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 58 1e-07
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 58 1e-07
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 54 2e-06
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 52 7e-06
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 51 2e-05
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 49 5e-05
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 49 7e-05
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 48 9e-05
UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whol... 46 6e-04
UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum... 40 0.023
UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:... 37 0.22
UniRef50_Q7MRG0 Cluster: NIFEN2; n=1; Wolinella succinogenes|Rep... 35 1.2
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 35 1.2
UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole gen... 35 1.2
UniRef50_Q9RZ17 Cluster: Amino acid ABC transporter, permease pr... 34 2.0
UniRef50_Q2GJW1 Cluster: Phage uncharacterized protein; n=1; Ana... 34 2.0
UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1; ... 34 2.0
UniRef50_UPI0000F2CAD6 Cluster: PREDICTED: hypothetical protein;... 33 2.7
UniRef50_Q1JT20 Cluster: Zinc finger domain containing protein, ... 33 2.7
UniRef50_Q11AT2 Cluster: Dihydroxy-acid and 6-phosphogluconate d... 33 4.7
UniRef50_Q7XEZ3 Cluster: Putative uncharacterized protein; n=1; ... 33 4.7
UniRef50_A2FD62 Cluster: Putative uncharacterized protein; n=1; ... 32 6.2
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 272 bits (668), Expect = 2e-72
Identities = 124/154 (80%), Positives = 136/154 (88%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 394 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQR 495
LGRKKGAKLT EE I+NKKRS+K KKY R++
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK 154
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 271 bits (665), Expect = 5e-72
Identities = 124/152 (81%), Positives = 134/152 (88%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 394 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSR 489
LGRKKGAKLT EE I+NKKRS+K KKY R
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDER 152
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 243 bits (595), Expect = 2e-63
Identities = 115/156 (73%), Positives = 131/156 (83%), Gaps = 2/156 (1%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD HKRRATGGKR +RKKRK+ELGRPAANTKLG R+H VR+RGGNTK RALRL
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
+TGNFAW SE RKTRI DVVYNASNNELVRTKTLVKN+IVV+DATPFRQWYE+HY+LP
Sbjct: 61 ETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLP 120
Query: 394 LGRKKGAKLTEAEEA--IINKKRSQKTAKKYLSRQR 495
LGRK+ K + E+ ++ KKRS+K KKYL RQ+
Sbjct: 121 LGRKRNPKHAQKEDENDVLTKKRSEKVMKKYLERQK 156
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 213 bits (521), Expect = 1e-54
Identities = 108/154 (70%), Positives = 119/154 (77%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 394 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQR 495
LGRKKGAKLT EE I+NKKRS+K KKY R++
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK 134
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 191 bits (466), Expect = 6e-48
Identities = 96/157 (61%), Positives = 115/157 (73%), Gaps = 4/157 (2%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 210
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 211 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 390
LDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 391 PLGRKK---GAKLTEAEEAIINKKRSQKTAKKYLSRQ 492
+GRKK AK AE + + +++R+
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRK 157
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 185 bits (450), Expect = 6e-46
Identities = 85/123 (69%), Positives = 103/123 (83%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD HKRR TGG+ +KKRKYELGRP++NTKLG + + VR RGGN K+RALRL
Sbjct: 1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
D+GNF+WGS+ TRKTR++DVVYNAS+NELVRTKTLVKNAIV VD TPF+ W+++HY L
Sbjct: 61 DSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLE 120
Query: 394 LGR 402
LG+
Sbjct: 121 LGK 123
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 166 bits (404), Expect = 2e-40
Identities = 85/150 (56%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGI R HKR+ TGGK RK+ K ELGR ANT+LG +R+ VR+RGGN K RALRL
Sbjct: 1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
DTGNFAW SE + R++DVVYNA++NELVRTKTLVKN IV VDA PF++WY HY +
Sbjct: 61 DTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGID 120
Query: 394 L-GRKKGAKLTEAEEAIINKKRSQKTAKKY 480
L KK K A E +K + A KY
Sbjct: 121 LDADKKSTKAAVAAEK-KGRKSAHAAADKY 149
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 149 bits (361), Expect = 3e-35
Identities = 70/120 (58%), Positives = 92/120 (76%), Gaps = 1/120 (0%)
Frame = +1
Query: 79 GKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWGSECSTR 255
G P+++++ YELGR ANTKL + + VR RGGNTK+RALR DT N++WGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 256 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEE 435
KTRI+DVVY A+NNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK + + ++
Sbjct: 173 KTRILDVVYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKVSVAKKDD 232
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 142 bits (344), Expect = 4e-33
Identities = 66/117 (56%), Positives = 86/117 (73%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGI+RD HKRRATGGK+ ++KK+K +GR ANT+LG R+H VR R G K RALRL
Sbjct: 1 MGITRDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 384
+ GNF+W S+ T+ T+I++VVYNAS+N+ VRT TLVK AI+ +D PFR W+ Y
Sbjct: 61 ENGNFSWASQSITKGTKILNVVYNASDNDFVRTNTLVKGAIIEIDPAPFRLWFLKFY 117
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 116 bits (280), Expect = 2e-25
Identities = 61/119 (51%), Positives = 76/119 (63%), Gaps = 9/119 (7%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKL---------GPQRIHLVRSRGG 186
MGI+ D +KR TG + KKRKY LGR ANTKL Q+I +R RGG
Sbjct: 1 MGITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGG 60
Query: 187 NTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 363
N K RALRL G+FAWGS + K RI+ VVYN+++NELVRT TLVK +V +D+ PF+
Sbjct: 61 NIKRRALRLSHGSFAWGSADISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFK 119
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 116 bits (278), Expect = 4e-25
Identities = 53/81 (65%), Positives = 64/81 (79%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD HKR ATG KR+ RKKR +E GR ANT++GP+RIHLVR+RGGN K+R LRL
Sbjct: 1 MGISRDSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDV 276
++GNF+WGSE RK R+I V
Sbjct: 61 ESGNFSWGSEGIARKVRVIVV 81
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 104 bits (250), Expect = 1e-21
Identities = 51/110 (46%), Positives = 72/110 (65%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGI+ HKRR TG K RKKR G ++TK+G +++ VR RGGN KY+ALRL
Sbjct: 1 MGINHRGDHKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 363
D G+F + + R +++ VVY+ S+NELVRT TL K+++V + A PF+
Sbjct: 61 DMGHFKFITTGKFRMAKLLQVVYHPSSNELVRTNTLTKSSVVKISAEPFK 110
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 100 bits (239), Expect = 2e-20
Identities = 51/105 (48%), Positives = 71/105 (67%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGI+R+ HKR++TGG ++ RKKR + GR +NTK+G + + +R RGG K RAL L
Sbjct: 1 MGINREGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 348
GNF++ S T K +I+ V +N S+NELVRT TL K +IV +D
Sbjct: 61 SYGNFSFVSIQRTFKAKILSVAFNESSNELVRTNTLTKGSIVYLD 105
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 78.2 bits (184), Expect = 1e-13
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +1
Query: 61 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWG 237
K++ TGGK+ I KK+ + G NT L I + R RGGN K++A+ L G+F W
Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWK 62
Query: 238 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 360
+ ++ ++I+ V+YN +N +LV+ + L K I+ +D+ PF
Sbjct: 63 TMQLSKNSKILSVLYNQANLKLVQKRNLSKGTIIKIDSMPF 103
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 66.1 bits (154), Expect = 4e-10
Identities = 35/92 (38%), Positives = 55/92 (59%)
Frame = +1
Query: 64 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 243
R+ +GG+ + K++ E+GR A T +G +R +VR+ GGN K RALRL+ + +
Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68
Query: 244 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 339
T+KT+I V N+++ VR K L K AI+
Sbjct: 69 GETKKTKIEAVEANSADPNYVRRKLLTKGAII 100
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 65.7 bits (153), Expect = 5e-10
Identities = 32/92 (34%), Positives = 52/92 (56%)
Frame = +1
Query: 64 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 243
R+ +GGK P KR+YELGR T+LG + + +RS GGN+K+ LR D N +
Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69
Query: 244 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 339
+TRK +I V N+++ V+ + + ++
Sbjct: 70 KTTRKVKINTVKENSADPHYVQRNIMNRGTVI 101
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 63.7 bits (148), Expect = 2e-09
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +1
Query: 64 RRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWGS 240
++ATGG RKKR++ELGR TKLG + ++R+ GGNTK +T N S
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69
Query: 241 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 348
E +K +II V N +N+ V+ + K ++ +
Sbjct: 70 EKKIKKAKIITVKANPANSHYVQRNIINKGTVIATE 105
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 58.0 bits (134), Expect = 1e-07
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +1
Query: 64 RRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWGS 240
++ +GG+ RKKRK ELGR +NT++ Q + ++R+ GGN K R N +
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYAN-VFDK 68
Query: 241 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 339
RK RII V+ N +N + R + K AI+
Sbjct: 69 SGKGRKVRIIRVLENPANRQFARRNIITKGAII 101
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 57.6 bits (133), Expect = 1e-07
Identities = 31/95 (32%), Positives = 46/95 (48%)
Frame = +1
Query: 64 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 243
R+ATGG+ R KRK+ELGR +G Q++ ++ G +K R L+ D N
Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68
Query: 244 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 348
T+K ++ V N +N VR L K V +
Sbjct: 69 GKTQKVKMTTVTENPANKNYVRRNFLTKGTFVTTE 103
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 57.6 bits (133), Expect = 1e-07
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +1
Query: 64 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLV-RSRGGNTKYRALRLDTGNFAWGS 240
R+ TGG + R KRKYE+G P T L + I + R+ GGN K R T N +
Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPA 69
Query: 241 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
+ +K +I++++ +N EL R +++ A + +A
Sbjct: 70 TNTAKKVKILEILETPANKELARRGIIIRGAKIRTEA 106
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 53.6 bits (123), Expect = 2e-06
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = +1
Query: 55 WHKR---RATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDT- 219
WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K + L+ T
Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATH 62
Query: 220 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 339
N A + RI +VV N ++ R + K AI+
Sbjct: 63 ANVADPETGEVKCVRIEEVVKNPASQYYERHGVITKGAII 102
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 52.0 bits (119), Expect = 7e-06
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +1
Query: 61 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWG 237
+R +TG K KK K E+GRPAA T++ + + +VR RG N K + + + N
Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQ 68
Query: 238 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 339
+ +K + +V+ N +N +R + K AI+
Sbjct: 69 ANKVCKKVVVTNVIDNKANKHYIRRNVMTKGAII 102
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 50.8 bits (116), Expect = 2e-05
Identities = 28/91 (30%), Positives = 46/91 (50%)
Frame = +1
Query: 67 RATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSEC 246
+ TGG+R P+R +RKYE+ R G Q + RG TK +D N A
Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGA 70
Query: 247 STRKTRIIDVVYNASNNELVRTKTLVKNAIV 339
+K++I+ V+ N +NN+ R + + A++
Sbjct: 71 KVKKSKIVKVLENPTNNDYRRRGVITRGAVL 101
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 49.2 bits (112), Expect = 5e-05
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Frame = +1
Query: 34 MGISRDHWH-KRRATGGKRAPIRK-KRKYELGRPAANTKLG---PQRIHLVRSRGGNTKY 198
MGI + W K++ +GGKR K KRKY GRP T L + VR+RGG+ K
Sbjct: 1 MGIYQ--WRDKKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKI 58
Query: 199 RALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 339
+A ++ + RK RI+ +V ++ E R +VK A++
Sbjct: 59 KAKKVAFAVVSNPKTGEARKARILRIVETPAHREYARRGIIVKGAVI 105
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 48.8 bits (111), Expect = 7e-05
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 64 RRATGGKRAPIRKKRKYEL-GRPAANTKLGPQRIHLV-RSRGGNTKYRALRLDTGNFAWG 237
++ +GGK+ +RK +K L G P KLG +V R RGGN K R N
Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIP 72
Query: 238 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 339
E + K +II ++ +N + R +VK +++
Sbjct: 73 KERKSVKAKIISIISTPANPDFARRNFIVKGSVI 106
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 48.4 bits (110), Expect = 9e-05
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Frame = +1
Query: 325 KNAIVVVDATPFRQWYESHYLLPLGR-----KKGAKLT--EAEEAIINKKRSQKTAKKYL 483
K+AIV + PFRQW+E+ YL LG KKG +T EE + KKRS+ KK+
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELGPPKVVCKKGPSVTPENPEEDFLLKKRSKSALKKFE 60
Query: 484 SRQ 492
+RQ
Sbjct: 61 TRQ 63
>UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whole
genome shotgun sequence; n=2; Coelomata|Rep: Chromosome
undetermined SCAF13783, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 149
Score = 45.6 bits (103), Expect = 6e-04
Identities = 27/68 (39%), Positives = 33/68 (48%)
Frame = +2
Query: 215 ILETSHGDLNVQPARLVLLMLFIMPLTMNWCVPKPW*RMLLSWWMPHLSGSGMKATTCCH 394
+LETSHG LN P R M MP TM+W P+ W R + S L SGM+
Sbjct: 1 MLETSHGALNAAPERPGSSMWSTMPPTMSWLEPRHWSRTVSSLLTACLLDSGMRPIMPLL 60
Query: 395 SEGRKVPS 418
R+ PS
Sbjct: 61 LGARRAPS 68
Score = 33.1 bits (72), Expect = 3.6
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 385 LLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSR 489
LL R+ + T EE ++NKKRS+KT KKY R
Sbjct: 59 LLLGARRAPSWYTPEEEEVLNKKRSKKTQKKYDER 93
>UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S8e - Thermofilum
pendens (strain Hrk 5)
Length = 128
Score = 40.3 bits (90), Expect = 0.023
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +1
Query: 64 RRATGG-KRAPIRKKRKYELGR-PAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWG 237
R+ TGG K ++ KRKY GR P + +V++RG K + N
Sbjct: 10 RKITGGIKGRHVKTKRKYLSGRYPILTVPGQATEVKVVKARGNTYKLKVKVASEVNVYIP 69
Query: 238 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 339
E T + +II V+ N SN + R + K AI+
Sbjct: 70 KEGKTVRAQIIKVLDNPSNKDFARRGIISKGAIL 103
>UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:
CG5899-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 844
Score = 37.1 bits (82), Expect = 0.22
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 238 SECSTRKT----RIIDVVYNASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYLLPLGR 402
SE ST+ T ++ + AS EL KTL K A+ ++D PF W + L R
Sbjct: 174 SEMSTKMTGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIR 233
Query: 403 KKGAKLTEAEEAIINKKRS 459
G L A+E +INK+ +
Sbjct: 234 MSGDLLNYAQE-LINKQNT 251
>UniRef50_Q7MRG0 Cluster: NIFEN2; n=1; Wolinella succinogenes|Rep:
NIFEN2 - Wolinella succinogenes
Length = 419
Score = 34.7 bits (76), Expect = 1.2
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -3
Query: 441 DGFLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQG 316
+G ++ LG FLP E +V P+ ER G N ILY+G
Sbjct: 358 EGVIACERLGGFLPKETPWLVRGYPIFERIGTGLGNDILYEG 399
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 34.7 bits (76), Expect = 1.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 70 ATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSR 180
A G +RAP K YE R AA T+L P + +R R
Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_54, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 110
Score = 34.7 bits (76), Expect = 1.2
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = +1
Query: 298 ELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKK 477
ELVRT+TLVKNAI+ Q Y HY L +G KK A T ++ +++ +K
Sbjct: 31 ELVRTQTLVKNAII--------QRYLQHYGLDIGCKKKASTTPRKK----ERKGNHVVRK 78
Query: 478 YLSRQR 495
RQ+
Sbjct: 79 LEKRQQ 84
>UniRef50_Q9RZ17 Cluster: Amino acid ABC transporter, permease
protein; n=1; Deinococcus radiodurans|Rep: Amino acid
ABC transporter, permease protein - Deinococcus
radiodurans
Length = 484
Score = 33.9 bits (74), Expect = 2.0
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +2
Query: 125 ARLPTLSLVPNAST*SDPVVVTLNIVPCVLILETSHGDLNVQPARLVL---LMLFIMPLT 295
A P L ++P T PV+V ++ +L + G +N +P RLVL L + L
Sbjct: 23 APAPVLGVLPR--TLVRPVLVLAGVLG---LLACALGWVNFRPNRLVLGEGRTLAALALP 77
Query: 296 MNWCVPKPW*RMLLSWWMP 352
+ W +P W +L S W+P
Sbjct: 78 LWWALPAAWAALLASGWLP 96
>UniRef50_Q2GJW1 Cluster: Phage uncharacterized protein; n=1;
Anaplasma phagocytophilum HZ|Rep: Phage uncharacterized
protein - Anaplasma phagocytophilum (strain HZ)
Length = 445
Score = 33.9 bits (74), Expect = 2.0
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -1
Query: 218 VSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPVAL---LLCQ*S 48
V R +A Y L R L W P ++L R + Y L M +LP +A C+ S
Sbjct: 314 VYRAKANYTELKKRVLHLSEHWKPDVILIEERSSGYQLLQEMSKKLPVIAFNPKKYCKLS 373
Query: 47 RLIPI 33
RL+ I
Sbjct: 374 RLLQI 378
>UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 620
Score = 33.9 bits (74), Expect = 2.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 349 ATPFRQWYESHYLLPLGRKKGAKLTEAE 432
ATPF Q + +HY+ L RKKG K+ E E
Sbjct: 374 ATPFYQTFLAHYIWQLKRKKGKKMKEDE 401
>UniRef50_UPI0000F2CAD6 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 130
Score = 33.5 bits (73), Expect = 2.7
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +1
Query: 43 SRDHWHK--RRATGGKRAPIRKKRKYELG--RPAANTKLGPQRIHLVRSRGGNTKYRALR 210
SR H H R GG P+ G R A +LG R+ L R RGG + R R
Sbjct: 27 SRGHGHAPARPGGGGGGGPLHALAARVGGERRAARARRLG--RVGLPRGRGGGARARKER 84
Query: 211 LDTGNFAWGSECS 249
G A GS CS
Sbjct: 85 ARAGRLAGGSRCS 97
>UniRef50_Q1JT20 Cluster: Zinc finger domain containing protein,
putative precursor; n=1; Toxoplasma gondii RH|Rep: Zinc
finger domain containing protein, putative precursor -
Toxoplasma gondii RH
Length = 1100
Score = 33.5 bits (73), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 480 VLLRCLLTAFFVYDGFLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSIL 325
+ L C++T F Y +L LS L T+ W ++ LPE G + +L
Sbjct: 947 LFLACMVTCLFSYHTYLMLSNLTTWESMAWHRISYLKDLPETKGSPFNRGVL 998
>UniRef50_Q11AT2 Cluster: Dihydroxy-acid and 6-phosphogluconate
dehydratase; n=40; Bacteria|Rep: Dihydroxy-acid and
6-phosphogluconate dehydratase - Mesorhizobium sp.
(strain BNC1)
Length = 580
Score = 32.7 bits (71), Expect = 4.7
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +1
Query: 211 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 390
+D+G+ SEC R I+++V+ +L+ T V+NA +V AT H L+
Sbjct: 230 VDSGHQRMASECGRR---IVEMVWEDLTPDLIVTDASVRNAAIVAMATGCSTNAVVH-LI 285
Query: 391 PLGRKKGAKLT 423
+ R+ G LT
Sbjct: 286 AMARRAGVDLT 296
>UniRef50_Q7XEZ3 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 192
Score = 32.7 bits (71), Expect = 4.7
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 70 ATGGKRAPIRKKRKYELGR-PAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFA 231
A GGKR KK+ GR PA NT L P ++HL+ RGGN R L + G+ A
Sbjct: 28 ADGGKR----KKQSSCGGRIPALNT-LTPLKLHLLLERGGNGGQRLLGVRRGDGA 77
>UniRef50_A2FD62 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 633
Score = 32.3 bits (70), Expect = 6.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 388 LPLGRKKGAKLTEAEEAIINKKRSQKTAKK 477
LPL K K T ++ I+N +RS+KT KK
Sbjct: 25 LPLNGKTAIKSTRRQKGIVNSQRSEKTPKK 54
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.317 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,314,072
Number of Sequences: 1657284
Number of extensions: 12508215
Number of successful extensions: 32058
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 31122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32045
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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