Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A11
         (497 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   0.66 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   2.7  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   3.5  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.2  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 401 GRKVPSSLRLRKPS*TKN 454
           GRK PSS R+  PS TK+
Sbjct: 63  GRKSPSSPRISSPSSTKS 80


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 91  PIRKKRKYELGRPAANTKLGPQRIH 165
           P+R   ++    PA N   GP   H
Sbjct: 36  PLRTSYQHHFNSPAGNAHTGPTGTH 60


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -1

Query: 341 TTIAFFT-KVLVRTNSLLEAL*T---TSIIRVLRVEHSDP--HA-KFPVSRRRARYLVL 186
           TT+A++   V  +    L+ + T   T ++  L ++  D   H  KF  S +RARYL+L
Sbjct: 86  TTVAWYAGNVACKVIRFLQVVVTYASTYVLVALSIDRYDAIRHPMKFSGSWKRARYLIL 144


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 437 ASSASVSLAPFFLPSGSR*WLSYHCLKGVASTTTIAFFT 321
           ASS SV+ AP    S +      H   G  S+ TIA  T
Sbjct: 171 ASSPSVTAAPHLRDSPNYIKPQLHVSTGSTSSPTIASAT 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,364
Number of Sequences: 336
Number of extensions: 3039
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)