Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A11
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 202 1e-52
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 54 7e-08
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3) 29 2.8
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 27 6.5
SB_47353| Best HMM Match : Neur_chan_memb (HMM E-Value=3.2) 27 6.5
SB_30690| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-09) 27 6.5
SB_42525| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_37037| Best HMM Match : PSI (HMM E-Value=0.061) 27 8.6
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 202 bits (494), Expect = 1e-52
Identities = 93/134 (69%), Positives = 110/134 (82%)
Frame = +1
Query: 91 PIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRII 270
P+R KRK+ELGRP ANTK+G +RIH VR+RGGN K+RA RLDT NF+WGSE TRK RII
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63
Query: 271 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINK 450
DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NK
Sbjct: 64 DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123
Query: 451 KRSQKTAKKYLSRQ 492
KRS +K +R+
Sbjct: 124 KRSNHCTRKLEARK 137
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 54.0 bits (124), Expect = 7e-08
Identities = 24/77 (31%), Positives = 46/77 (59%)
Frame = +1
Query: 151 PQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 330
P++I ++ GG+TK +ALR++ G + S+ + I+ V+++ +N E + +VK
Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96
Query: 331 AIVVVDATPFRQWYESH 381
+IV VD PF W++ +
Sbjct: 97 SIVQVDNKPFEDWFQEY 113
>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 250 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 363
T++ +I D++ N N VR +TL+ NA +++D F+
Sbjct: 18 TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 67 RATGGKRAPIRKKRKYELGRPAANTKLGP 153
R GG R P+++ +E +P+ N + GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797
>SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)
Length = 115
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 26 HEGWVSVVIIGIRGGLRAANVRPF 97
H+GW VIIG+ G + + RPF
Sbjct: 31 HKGWGESVIIGVAAGGQEISTRPF 54
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 22 SARGMGISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTKLGPQRIHLV 171
S + +S D W K++ K+ I+KKR+ + A +LG QR+ +
Sbjct: 382 SPKMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 335 LSWWMPHLSGSGMKATTCCHSEGRKVPSSLRL 430
L+ WM HL + CH+EGR + L L
Sbjct: 1881 LTIWMKHLENWPLHMPIVCHAEGRTTAAILLL 1912
>SB_47353| Best HMM Match : Neur_chan_memb (HMM E-Value=3.2)
Length = 133
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 343 VDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQR 495
+ A R+W+E K+ A+L +I+ + +K AK+Y+ +QR
Sbjct: 53 IKANNARKWWEKEMRANQTAKELARLASWRTWVISGETVEKKAKQYVFKQR 103
>SB_30690| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-09)
Length = 193
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 343 VDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQR 495
+ A R+W+E K+ A+L +I+ + +K AK+Y+ +QR
Sbjct: 87 IKANNARKWWEKEMRANQTAKELARLASWRTWVISGETVEKKAKQYVFKQR 137
>SB_42525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 177 GSD*VDALGTKLSVGSRAT*LILPLLTNGRTFAARSPPLMPMITTD 40
GS +D L +L+ G R T + L +GR + SPPL+ I D
Sbjct: 15 GSGDLDYLERQLNCGLRTT--AVTWLHSGRVVSRNSPPLLGHIVND 58
>SB_37037| Best HMM Match : PSI (HMM E-Value=0.061)
Length = 284
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 260 LVLLMLFIMPLTMNWCVPKPW*RMLLSW 343
LVLL+L ++ LT CV W + SW
Sbjct: 213 LVLLLLCVVGLTTTVCVANEWHFKIYSW 240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,410,505
Number of Sequences: 59808
Number of extensions: 391151
Number of successful extensions: 814
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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