Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A11
(497 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 272 3e-73
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 272 3e-73
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 272 3e-73
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 272 3e-73
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 213 2e-55
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 33 0.55
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 272 bits (668), Expect = 3e-73
Identities = 124/154 (80%), Positives = 136/154 (88%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 394 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQR 495
LGRKKGAKLT EE I+NKKRS+K KKY R++
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK 154
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 272 bits (668), Expect = 3e-73
Identities = 124/154 (80%), Positives = 136/154 (88%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 394 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQR 495
LGRKKGAKLT EE I+NKKRS+K KKY R++
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK 154
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 272 bits (668), Expect = 3e-73
Identities = 124/154 (80%), Positives = 136/154 (88%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 394 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQR 495
LGRKKGAKLT EE I+NKKRS+K KKY R++
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK 154
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 272 bits (668), Expect = 3e-73
Identities = 124/154 (80%), Positives = 136/154 (88%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 394 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQR 495
LGRKKGAKLT EE I+NKKRS+K KKY R++
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK 154
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 213 bits (521), Expect = 2e-55
Identities = 108/154 (70%), Positives = 119/154 (77%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 394 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQR 495
LGRKKGAKLT EE I+NKKRS+K KKY R++
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKK 134
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 33.1 bits (72), Expect = 0.55
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 418 LTEAEEAIINKKRSQKTAKKYLSRQR 495
LT EE I+NKKRS+K KKY R++
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKK 26
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,145,373
Number of Sequences: 237096
Number of extensions: 2053074
Number of successful extensions: 3743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3743
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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