Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A11
(497 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 236 6e-63
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.15
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.15
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.15
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.15
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.15
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.15
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 1.1
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 1.1
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 1.1
Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical pr... 28 4.3
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 4.3
AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical ... 28 4.3
AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical ... 28 4.3
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 27 7.6
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 27 7.6
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 27 10.0
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 27 10.0
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 236 bits (578), Expect = 6e-63
Identities = 108/154 (70%), Positives = 125/154 (81%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 213
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 214 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 393
D+GNF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 394 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQR 495
L RKK AKL+E + AI+NKKRS T KKY RQ+
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQK 154
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 155 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPI 33
W S V +GRPN +++G P A+L C S++I +
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQV 423
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 155 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPI 33
W S V +GRPN +++G P A+L C S++I +
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQV 423
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 155 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPI 33
W S V +GRPN +++G P A+L C S++I +
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQV 332
>Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical
protein F22E12.1 protein.
Length = 763
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 117 LILPLLTNGRTFAARSPPLMPMITT-DTHPSCRIRHE 10
+I P+LT + P +P+ITT TH R++HE
Sbjct: 488 VIQPILTTQAVYTTEEP-YIPLITTVPTHEISRLKHE 523
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 244 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 366
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical
protein F22E12.1 protein.
Length = 763
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 117 LILPLLTNGRTFAARSPPLMPMITT-DTHPSCRIRHE 10
+I P+LT + P +P+ITT TH R++HE
Sbjct: 488 VIQPILTTQAVYTTEEP-YIPLITTVPTHEISRLKHE 523
>AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical
protein C03H5.4 protein.
Length = 160
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 435 FLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTH 304
FL LG LP V I RC HHD + +Y G+G +
Sbjct: 2 FLFPLVLGFLLPETLNTFVLEIQFMTRCMTHHD-AWIYNGYGCY 44
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 338 SWWMPHLSGSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRST*AG 490
S + PHLS S K T HS+ + PSS +KPS + + R R + G
Sbjct: 763 SSYSPHLSVSADKDTMSMHSQTSRRPSS---QKPSYSGSYSARSRGGSSTG 810
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 338 SWWMPHLSGSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRST*AG 490
S + PHLS S K T HS+ + PSS +KPS + + R R + G
Sbjct: 763 SSYSPHLSVSADKDTMSMHSQTSRRPSS---QKPSYSGSYSARSRGGSSTG 810
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 26.6 bits (56), Expect = 10.0
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 19 NSARGMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRS 177
N G R HWHKR T + P RK R+ + R A ++ P+ + L+RS
Sbjct: 6 NQMLGNAHFRKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS 57
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 26.6 bits (56), Expect = 10.0
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 19 NSARGMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRS 177
N G R HWHKR T + P RK R+ + R A ++ P+ + L+RS
Sbjct: 6 NQMLGNAHFRKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,961
Number of Sequences: 27780
Number of extensions: 281640
Number of successful extensions: 763
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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