BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_A11 (497 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso... 195 2e-50 At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri... 187 4e-48 At1g73260.1 68414.m08478 trypsin and protease inhibitor family p... 29 1.3 At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / sta... 29 2.3 At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containi... 27 5.3 At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-conta... 27 7.0 At4g11490.1 68417.m01847 protein kinase family protein contains ... 27 7.0 At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.0 At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta... 27 7.0 >At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal protein S8 - Zea mays, PIR:T04088 Length = 222 Score = 195 bits (475), Expect = 2e-50 Identities = 103/164 (62%), Positives = 120/164 (73%), Gaps = 11/164 (6%) Frame = +1 Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 210 MGISRD HKRRATGGK+ RKKRKYE+GR ANTKL + + +R RGGN K+RALR Sbjct: 1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60 Query: 211 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 390 LDTGN++WGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + Sbjct: 61 LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120 Query: 391 PLGR-KKGAKLT-----EAEEAII----NKKRSQKTAKKYLSRQ 492 LGR KK A T E EEA + K+S +K SRQ Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQ 164 >At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ribosomal protein S8, Prunus armeniaca, EMBL:AF071889 Length = 210 Score = 187 bits (455), Expect = 4e-48 Identities = 96/154 (62%), Positives = 111/154 (72%), Gaps = 1/154 (0%) Frame = +1 Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 210 MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + +R RGGN K+RALR Sbjct: 1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60 Query: 211 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 390 LDTGNF+WGSE TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y HY + Sbjct: 61 LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120 Query: 391 PLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQ 492 +GRKK + EE K+S +K RQ Sbjct: 121 DIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQ 150 >At1g73260.1 68414.m08478 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor Length = 215 Score = 29.5 bits (63), Expect = 1.3 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +1 Query: 301 LVRTKTLVKNAI-VVVDATPFRQWYESHYLLPLGRKKGAKLTEA 429 L T L NA VVD ++ES+Y+LP+ R +G LT A Sbjct: 16 LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59 >At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / starch branching enzyme class II (SBE2-2) identical to starch branching enzyme class II [Arabidopsis thaliana] GI:726490 Length = 716 Score = 28.7 bits (61), Expect = 2.3 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -2 Query: 136 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 44 WQ GD+ +T ++ W+ C SYA HD Sbjct: 459 WQMGDIIYTLTNRRWSEKC----ISYAESHD 485 >At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat. Gene continues on the 3' end of BAC F19G10 gb|AF000657 gene F19G10.21 Length = 703 Score = 27.5 bits (58), Expect = 5.3 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -3 Query: 432 LSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSI 328 L++SE+ F+P W+Q+ P+ E H D S+ Sbjct: 13 LTVSEICKFIPQSWKQLPR--PISETSKTHDDESV 45 >At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-containing protein Length = 1104 Score = 27.1 bits (57), Expect = 7.0 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -2 Query: 316 FWYAPIHC*RHYKQHQ*YESCGLNIQIPMRSFQYQDAG 203 FW HC YK + Y + LN I RS+ D G Sbjct: 159 FWTCCEHCGYRYKYLRKYVNILLNCNICQRSYMAYDTG 196 >At4g11490.1 68417.m01847 protein kinase family protein contains Pfam PF00069: Protein kinase domain Length = 636 Score = 27.1 bits (57), Expect = 7.0 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -1 Query: 356 GVASTTTIAFFTKVLVRTNSLLEAL*TTSIIRVLRVEHSDPHAKFP 219 G ++ FF ++V T ++ L T ++ V R +DP + P Sbjct: 258 GSKRNISVGFFVAIVVATGVVISVLSTLVVVLVCRKRKTDPPEESP 303 >At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 473 Score = 27.1 bits (57), Expect = 7.0 Identities = 20/62 (32%), Positives = 32/62 (51%) Frame = -1 Query: 353 VASTTTIAFFTKVLVRTNSLLEAL*TTSIIRVLRVEHSDPHAKFPVSRRRARYLVLPPRD 174 + +TT +A K+LV +++ L T I+ RV + + S R RY++LP RD Sbjct: 16 IRATTALA---KLLVASDNRLSV---TLIVIPSRVSDDASSSVYTNSEDRLRYILLPARD 69 Query: 173 LT 168 T Sbjct: 70 QT 71 >At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch branching enzyme class II (SBE2-1) nearly identical to starch branching enzyme class II [Arabidopsis thaliana] GI:619939 Length = 858 Score = 27.1 bits (57), Expect = 7.0 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 136 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 44 WQ GD+T T ++ W C YA HD Sbjct: 583 WQVGDITFTLTNRRWGEKC----VVYAESHD 609 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.317 0.132 0.389 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,079,730 Number of Sequences: 28952 Number of extensions: 271257 Number of successful extensions: 642 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 621 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 640 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 878448512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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