Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A10
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   1.0  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    23   4.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   5.5  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    23   7.3  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    23   7.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    22   9.6  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 181 LICIIYLLYTKEIIIYGILYVI 116
           LIC+ Y + +  I+++G++Y I
Sbjct: 643 LICLCYSIISPLILVFGLIYFI 664


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 22  WWW*SVVRDGMC 57
           WWW S +  G C
Sbjct: 554 WWWRSFITPGFC 565


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 187  GKLICIIYLLYTKEIIIYGI 128
            GKL+C +Y    K  + YG+
Sbjct: 1697 GKLVCNLYKTILKHYVHYGL 1716


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 61  HGCYYCCWE 87
           HG +YC WE
Sbjct: 162 HGVHYCIWE 170


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 208 FFFFLSYGKLICIIYLLYTKEIIIYGILYVINCIKSFIGT 89
           FF   SYG  +C+I      ++ I GIL  +  +   IGT
Sbjct: 106 FFIEFSYGTYLCLI------QLAIDGILDAVADVGEEIGT 139


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 67   CYYCCWEEF 93
            C++C WE+F
Sbjct: 1522 CFFCRWEDF 1530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,254
Number of Sequences: 5004
Number of extensions: 9952
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)