Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A10
         (212 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007           27   1.6  
03_01_0020 + 180963-181346,181432-181994,183000-183822                 27   1.6  
06_03_1481 - 30436904-30437059,30437150-30437221,30437559-304379...    27   2.7  
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    27   2.7  
01_05_0328 + 21035231-21036931                                         27   2.7  
01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323           27   2.7  
10_08_0878 - 21239104-21239968,21242008-21242927                       25   6.3  

>08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007
          Length = 603

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 211 FFFFFLSYGKLICIIYLLYTKE 146
           +FFFF+S G L+ +  L+Y ++
Sbjct: 197 WFFFFISLGSLLAVTVLVYVQD 218


>03_01_0020 + 180963-181346,181432-181994,183000-183822
          Length = 589

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 211 FFFFFLSYGKLICIIYLLYTKE 146
           +FFFF+S G L+ +  L+Y ++
Sbjct: 208 WFFFFISMGSLLAVTVLVYVQD 229


>06_03_1481 -
           30436904-30437059,30437150-30437221,30437559-30437902,
           30438014-30438137,30438244-30438386,30438792-30438927,
           30439469-30439818,30440458-30440542
          Length = 469

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 211 FFFFFLSYGK-LICIIYLLYTKEIIIYGILYVINCIKS 101
           FFF ++  G+ LI  +Y    K I I+G++ + NC KS
Sbjct: 432 FFFGYIFIGRTLIDTVY----KNIDIFGVVKIANCSKS 465


>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
            725738-725840,726106-726264,726728-726846,726891-727004,
            727119-727277,727404-727451,728464-728640,729064-729116,
            729549-729661,729793-729873,729966-730081,730786-730905,
            732321-732429,732593-732770,732852-732920,733102-733233,
            733657-733766,733843-734003,734081-734171,734258-734355,
            734499-734619,734732-734892,734985-735090,735142-735236,
            735828-735852,736008-736084,736196-736282,736372-736421,
            736558-736639,736735-736795,737064-737116,737206-737395,
            737472-737595,737860-737962,738064-738156,740344-740422,
            740508-740584,740915-741043,742614-742731,742816-742913,
            743457-743546,744998-745123,745238-745351,745488-745611,
            745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 205  FFFLSYGKLICIIYLLYTKEIIIYGILYV 119
            FFF + G  +C +  + T  I +YG +Y+
Sbjct: 1484 FFFTTVGYYVCTMMTVLTVYIFLYGRVYL 1512


>01_05_0328 + 21035231-21036931
          Length = 566

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 208 FFFFLSYGKLICIIYLLYTKE 146
           FFFF+S G L+ +  L+Y ++
Sbjct: 175 FFFFISLGTLLAVTVLVYVQD 195


>01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323
          Length = 217

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 56  HIPSRTTLYHHHG 18
           H PS  TL+HHHG
Sbjct: 64  HAPSPPTLHHHHG 76


>10_08_0878 - 21239104-21239968,21242008-21242927
          Length = 594

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 211 FFFFFLSYGKLICIIYLLYTKE 146
           +F+FF+S G L+ +  L+Y ++
Sbjct: 196 WFYFFVSLGALLAVTVLVYVQD 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,565,951
Number of Sequences: 37544
Number of extensions: 58800
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)