Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A10
         (212 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-15|CAN86590.1|  540|Caenorhabditis elegans Hypothetical p...    31   0.11 
Z72502-14|CAA96584.2|  536|Caenorhabditis elegans Hypothetical p...    31   0.11 
AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine r...    26   4.2  
AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transpor...    25   7.3  
Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z72502-15|CAN86590.1|  540|Caenorhabditis elegans Hypothetical
           protein C08B6.1b protein.
          Length = 540

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 205 FFFLSYGKLICIIYLLYTKEIIIYGILYVINCIK 104
           F F SY  L+ + +L+ T  ++++ +LYV  CIK
Sbjct: 496 FQFYSYDILVVVCFLIIT--VVVFIVLYVFQCIK 527


>Z72502-14|CAA96584.2|  536|Caenorhabditis elegans Hypothetical
           protein C08B6.1a protein.
          Length = 536

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 205 FFFLSYGKLICIIYLLYTKEIIIYGILYVINCIK 104
           F F SY  L+ + +L+ T  ++++ +LYV  CIK
Sbjct: 492 FQFYSYDILVVVCFLIIT--VVVFIVLYVFQCIK 523


>AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein20 protein.
          Length = 338

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 205 FFFLSYGKLICIIYLLY 155
           F+F+ YG L+ +IY+L+
Sbjct: 125 FYFMPYGLLLSVIYVLF 141


>AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transporter
           (pgp related)protein 4 protein.
          Length = 787

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 190 YGKLICIIYLLYTKEIIIYGILYVINCIKSFI 95
           YGKL   + +  TK I   G L+V    +SFI
Sbjct: 386 YGKLTHTLDVTRTKAIAYIGFLWVSELFQSFI 417


>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 211 FFFFFLSYGKLICIIYLLYTKEIIIYGILY 122
           FFFFF S  +  CI    Y  E I  G+ +
Sbjct: 77  FFFFFSSLMETYCINEFKYADETIKDGVCH 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,957,411
Number of Sequences: 27780
Number of extensions: 56693
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)