Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A10
         (212 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to...    26   3.0  
At5g40110.1 68418.m04865 hypothetical protein                          25   6.9  
At3g07160.1 68416.m00853 glycosyl transferase family 48 protein ...    25   6.9  
At2g36850.1 68415.m04519 glycosyl transferase family 48 protein ...    25   9.1  

>At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to
           nitrate transporter (ntp2) [Arabidopsis thaliana]
           GI:4490321
          Length = 577

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 208 FFFFLSYGKLICIIYLLYTKE 146
           FFFF+S G L+ +  L+Y ++
Sbjct: 188 FFFFISMGTLLAVTVLVYMQD 208


>At5g40110.1 68418.m04865 hypothetical protein
          Length = 280

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
 Frame = +1

Query: 37  VVRDGMCRHGCYYCC----WEEF 93
           V R  MC+HG Y C     WE F
Sbjct: 234 VTRRSMCQHGLYQCTYTIDWEVF 256


>At3g07160.1 68416.m00853 glycosyl transferase family 48 protein
            similar to glucan synthase GB:AAD11794 [Filobasidiella
            neoformans var. neoformans]
          Length = 1931

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 205  FFFLSYGKLICIIYLLYTKEIIIYGILYV 119
            FFF + G  +C +  + T  I +YG  Y+
Sbjct: 1499 FFFTTVGFYLCTMLTVLTVYIFLYGRAYL 1527


>At2g36850.1 68415.m04519 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1680

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 205  FFFLSYGKLICIIYLLYTKEIIIYGILYV 119
            F+F + G  +C +  + T  + +YG +Y+
Sbjct: 1268 FYFTTVGFYVCTMMTVLTVYVFLYGRVYL 1296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,614,961
Number of Sequences: 28952
Number of extensions: 48276
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 12,070,560
effective HSP length: 50
effective length of database: 10,622,960
effective search space used: 212459200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)