Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A09
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 104 6e-24
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 35 0.006
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 35 0.006
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 33 0.024
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 29 0.29
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 27 0.88
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 27 0.88
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 3.6
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.7
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 25 6.2
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 6.2
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch... 24 8.2
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 24 8.2
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp... 24 8.2
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 24 8.2
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 104 bits (249), Expect = 6e-24
Identities = 46/82 (56%), Positives = 65/82 (79%)
Frame = +2
Query: 56 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKT 235
+VQKVM+ PIN IF+ LQ + V IWL+E ++R++G I GFDE+MNIVLD+A +V K
Sbjct: 4 RVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAK- 62
Query: 236 KNRKQIGRIMMKGDNITLIQNV 301
N++++GRI++KGDNITLIQ +
Sbjct: 63 NNKRELGRILLKGDNITLIQAI 84
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 34.7 bits (76), Expect = 0.006
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +2
Query: 128 IWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLI 292
+W+ G +VGFD+Y+NIVL + E T ++ +++ G+ + ++
Sbjct: 19 LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCML 73
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 34.7 bits (76), Expect = 0.006
Identities = 15/60 (25%), Positives = 40/60 (66%)
Frame = +2
Query: 125 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
Q+++ N + ++ G + G+D ++NIVL+++ E + + K IG + ++G+++ +I+ ++
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIETLD 74
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 32.7 bits (71), Expect = 0.024
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 155 RIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKG 274
+I G + GFD+ MN+VLD+ EE ++ K G I G
Sbjct: 45 QITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLG 84
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 29.1 bits (62), Expect = 0.29
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEV-HMKTKN---------RKQIGRIMMKGDNITLIQNVNP 307
G ++ FD +MN+VL + +E H+K +N ++ +G ++++G+ I + P
Sbjct: 26 GQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVILRGEFIVSLSVQGP 83
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 27.5 bits (58), Expect = 0.88
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEAEEV 223
+ G + +DE++N+VL +AEE+
Sbjct: 32 LNGRLHAYDEHLNMVLGDAEEI 53
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.5 bits (58), Expect = 0.88
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 299 HFVLA-LYCLPSSLFYRFVSCS*FSYELLQLHPKQCSCIRQIPRCA 165
H +L+ L CLP S YR +C+ +++ L +C C+R +P A
Sbjct: 94 HLLLSSLPCLPRSEIYRLANCNKLQFQISLL---RC-CLRIVPYSA 135
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.4 bits (53), Expect = 3.6
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = -1
Query: 304 IYILY*RYIVSLHHYSTDLFPVLSFHMNFFSFIQNNVHVFVKSHDVPLDSQIHVLVKPN 128
I L+ R +L S + F + + F+F ++NVH ++ + P+ + H +KP+
Sbjct: 594 IKYLFKRVSETLSTASLECFRIFVYRSALFAFNKSNVHEIIQLLNEPV--KYHNFLKPS 650
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 310 VRIYILY*RYIVSLHHYSTDLFPVLSFHMNFFSFI 206
+ ++LY + I+S H + ++SFH FFSF+
Sbjct: 155 INFFLLYHQIILS--HSLFHISHLISFHFLFFSFL 187
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 161 EGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNI 283
+G + D YMN+ L AEE+ K +G I+++ +N+
Sbjct: 31 KGTLQSVDSYMNLQLLNAEELVDGVKT-GDLGEILIRCNNV 70
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 6.2
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 72 WYSPSILSSD-IYKIEAVYKFGF 137
W+ P+ + +D +Y+ E +Y FGF
Sbjct: 176 WWWPTFVYNDFMYEFERLYAFGF 198
>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 186
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 41 YKGPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENV 148
YKG + V++ + LIF + + SR W N+
Sbjct: 41 YKGAWVIHIVLIAALRLIFHAIPSVSRELAWTLTNL 76
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 26 IFEMAYKGPPKVQKVM 73
I ++ YKGPP+V+K +
Sbjct: 492 IVKIVYKGPPQVRKAL 507
>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 24.2 bits (50), Expect = 8.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 226 MNFFSFIQNNVHVFVKSHDVPLDSQIHVLVKPNLYT 119
M FF+ I ++VFV SH VP D + P Y+
Sbjct: 98 MGFFANI-GPLNVFVSSHLVPPDMKFDPTANPPNYS 132
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 24.2 bits (50), Expect = 8.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 58 SSKGDGTAHQSYLQIFTK*KPCTNLALREREFENRGAH 171
++K +G AH F K + AL E EFEN GAH
Sbjct: 58 TAKNNGAAHFLEHLAFKGTKNRSQKAL-ELEFENTGAH 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,165
Number of Sequences: 5004
Number of extensions: 34788
Number of successful extensions: 106
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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