Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A09
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 101 2e-22
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 71 3e-13
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 46 1e-05
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 43 9e-05
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 43 1e-04
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 32 0.21
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 30 0.65
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 30 0.86
12_01_0873 - 8341660-8341899,8342876-8343020,8343123-8343339,834... 27 6.0
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 6.0
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 27 6.0
12_02_0471 - 19445969-19446464,19447403-19447594,19448434-19448843 27 8.0
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 101 bits (242), Expect = 2e-22
Identities = 46/83 (55%), Positives = 64/83 (77%)
Frame = +2
Query: 56 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKT 235
KVQ++M QPI ++R+QIWL+E +LRIEG I+GFDEYMN+VLD+AEE+++K
Sbjct: 5 KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKK 55
Query: 236 KNRKQIGRIMMKGDNITLIQNVN 304
RK +GRI++KGDNITL+ N +
Sbjct: 56 DTRKSLGRILLKGDNITLMMNTS 78
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 71.3 bits (167), Expect = 3e-13
Identities = 30/51 (58%), Positives = 41/51 (80%)
Frame = +2
Query: 146 VNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQN 298
V++ + H GFDEYMN+VLDEAEE+++K RK +GRI++KGDNITL+ N
Sbjct: 88 VSVTLHVHAKGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLMMN 138
Score = 66.1 bits (154), Expect = 1e-11
Identities = 30/50 (60%), Positives = 41/50 (82%)
Frame = +2
Query: 56 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVL 205
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I+ Y+N VL
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII---MYVNSVL 51
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/86 (27%), Positives = 49/86 (56%)
Frame = +2
Query: 50 PPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHM 229
PP ++K M + + + Y + + + N N + G + GFD++MN+V+D EV+
Sbjct: 7 PPDLKKYMDKKLQTLMVYSFTLFSI-LPVKLNANRVVIGTLRGFDQFMNLVVDNTVEVNG 65
Query: 230 KTKNRKQIGRIMMKGDNITLIQNVNP 307
KN IG ++++G+++ +I+ + P
Sbjct: 66 NEKN--DIGMVVIRGNSVVMIEALEP 89
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 43.2 bits (97), Expect = 9e-05
Identities = 20/70 (28%), Positives = 43/70 (61%)
Frame = +2
Query: 98 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGD 277
+Y+ + ++++ N N I G + GFD++MN+V+D EV+ K IG ++++G+
Sbjct: 12 KYMDKKLQIKL----NANRVIVGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVVRGN 65
Query: 278 NITLIQNVNP 307
++ +I+ + P
Sbjct: 66 SVVMIEALEP 75
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 42.7 bits (96), Expect = 1e-04
Identities = 17/62 (27%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +2
Query: 125 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRK--QIGRIMMKGDNITLIQN 298
+IW+ + + G + GFD Y+N+VL++ E + R+ ++ +I++ G+NI +++N
Sbjct: 91 KIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAIVRN 150
Query: 299 VN 304
++
Sbjct: 151 LD 152
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 31.9 bits (69), Expect = 0.21
Identities = 14/53 (26%), Positives = 31/53 (58%)
Frame = +2
Query: 161 EGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNVNPNASV 319
+G++V D YMN+ L EE ++ + +G I+++ +N+ ++ V +A +
Sbjct: 43 DGYLVSVDSYMNLQLANTEE-YIDGQFSGNLGEILIRCNNVLYLRGVPEDAEI 94
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +2
Query: 152 LRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNVNPNASV 319
+ +G++V D YMN+ L EE ++ + +G I+++ +N+ ++ V + +
Sbjct: 79 MEYKGYLVSVDSYMNLQLANTEE-YIDGQFSGNLGEILIRCNNVLYLRGVPEDTEI 133
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 29.9 bits (64), Expect = 0.86
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEAEEVH------MKTKNR-KQIGRIMMKGDNITLI 292
+ G + G+D+ +N+VLDEA E +K + +Q+G I+ +G + L+
Sbjct: 36 VTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGKTRQLGLIVCRGTAVMLV 87
>12_01_0873 -
8341660-8341899,8342876-8343020,8343123-8343339,
8343427-8343703,8346682-8346849
Length = 348
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 221 VHMKTKNRKQIGRIMMKGDNITLIQNVNP 307
V++ T + K I + +K DNI L N+NP
Sbjct: 169 VYLHTHSEKPIVHLDLKPDNILLDSNMNP 197
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 50 PPKVQKVMVQPINLIFRYLQNRSRVQIWLY 139
PPK QK + +Y++N R W+Y
Sbjct: 506 PPKCQKTQCCANGMSLKYVKNYKRKAFWIY 535
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEE 220
N I G + GFD+ NI+LDE+ E
Sbjct: 21 NDGRNIVGTLRGFDQATNIILDESHE 46
>12_02_0471 - 19445969-19446464,19447403-19447594,19448434-19448843
Length = 365
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 268 HHYSTDLFPVLSFHMNFFSFIQNNVHVFVKSHDVPLDSQIHVL 140
H +L VL M F + N+ V K HD P+D+ +H +
Sbjct: 71 HEREVELEMVLGRMMPSFLALDWNLEV-AKQHDEPMDTTVHAI 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,316,089
Number of Sequences: 37544
Number of extensions: 188862
Number of successful extensions: 433
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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