Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A09
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)                       53   8e-08
SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   2e-05
SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)              42   2e-04
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_57202| Best HMM Match : DUF805 (HMM E-Value=4.9)                    28   2.7  
SB_30272| Best HMM Match : GDI (HMM E-Value=0)                         27   4.7  
SB_19998| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)                   27   8.2  

>SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)
          Length = 198

 Score = 53.2 bits (122), Expect = 8e-08
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +2

Query: 176 GFDEYMNIVLDEAEEVHMKTKNRKQIGRI 262
           GFDEYMN+VLDEAEEVH+KTK RK + RI
Sbjct: 124 GFDEYMNLVLDEAEEVHLKTKTRKPLVRI 152


>SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 16/59 (27%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +2

Query: 56  KVQKVMVQPINLIFRYLQNRSRVQIWL--YENVNLRIEGHIVGFDEYMNIVLDEAEEVH 226
           K+Q   V P+++++R ++ R ++++W   Y+ +   + G+++ FD++MN+ L + +EV+
Sbjct: 143 KMQACSVGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVY 201


>SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)
          Length = 974

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
 Frame = +2

Query: 74  VQPINLIFRYLQNRSRVQIWL--YENVNLRIEGHIVGFDEYMNIVLDEAEEVH 226
           V P+++++R ++ R ++++W   Y+ +   + G+++ FD++MN+ L + +EV+
Sbjct: 4   VGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVY 56


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 323 ITLMRSDLHFVLALYCLPSSLFYRFVSCS*FSYELLQLHPKQCSCIRQIPRCA 165
           I ++ S L F+   Y L   + +R +     SY++ ++H K C+C R +  CA
Sbjct: 335 IVMVESHLRFIAVAYNLKFKMKFRTLKQR--SYKI-RVHRKCCACGRSVHTCA 384


>SB_57202| Best HMM Match : DUF805 (HMM E-Value=4.9)
          Length = 170

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -1

Query: 220 FFSFIQNNVHVFVKSHDVPLDSQIHVLVKPNLYTASIL 107
           FFSF   N+H  + S+ +P +S IHV V   L   SIL
Sbjct: 19  FFSFY-GNIHPVI-SNSLPANSAIHVTVNALLVAYSIL 54


>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 311  RSDLHFVLALYCLPSSLFYRFVSCS*FSYELLQLHPKQCSCIRQIPRCAPRFS 153
            R+  + ++ LY  PSS F      +  SY L+ L+  + SC   +PR A  +S
Sbjct: 1124 RASSYSLVVLYLTPSSCFILLPRRA-SSYSLVVLYLTRSSCFILLPRRASSYS 1175


>SB_19998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 344 LSCTL*PITLMRSDLHFVLALYCLP 270
           L CT+    L RS +H +L++ CLP
Sbjct: 517 LRCTVSTTELRRSAIHLLLSMLCLP 541


>SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 278 CLPSSLFYRFVSCS*FSYELLQLHPKQCSCIRQIPRC--APRFSNSRSRKAK 129
           C+ S+L Y   S + ++ +  +L+     C+R+IPR   + +  N+RS K +
Sbjct: 620 CILSTLLYGSESWTTYARQEKRLNTFHMRCLRRIPRIHWSDKLRNTRSSKIR 671


>SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)
          Length = 903

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 229 HMNFFSFIQNNVHVFVKSHD--VPLDSQIHVLVKP 131
           H+NFFSF +N + V V+  D   P+  ++  L +P
Sbjct: 622 HLNFFSFRENRLSVTVRHVDPEQPMSCRLAFLKEP 656


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,492,594
Number of Sequences: 59808
Number of extensions: 228919
Number of successful extensions: 431
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)