Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A09
(418 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 157 1e-38
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 157 1e-38
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 157 1e-38
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 157 1e-38
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 153 2e-37
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 147 1e-35
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 133 2e-31
S60260-1|AAC60592.1| 104|Homo sapiens B-raf protein. 82 6e-16
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 37 0.023
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 37 0.023
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 37 0.023
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 37 0.023
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 37 0.023
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 37 0.023
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 37 0.023
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 37 0.023
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 37 0.023
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 37 0.023
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 36 0.072
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 36 0.072
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 36 0.072
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 36 0.072
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 33 0.51
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 29 4.7
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 29 4.7
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 29 4.7
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 29 4.7
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 29 6.2
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 29 6.2
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 29 6.2
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 29 6.2
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 29 6.2
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 29 6.2
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 29 6.2
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 29 6.2
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 29 6.2
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 29 6.2
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 29 6.2
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 29 6.2
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 29 6.2
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 29 6.2
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 29 6.2
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 29 6.2
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 29 6.2
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 29 6.2
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 29 6.2
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 29 6.2
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 29 6.2
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 29 6.2
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 29 6.2
AF009014-1|AAC39579.1| 1007|Homo sapiens glutamate receptor delt... 29 6.2
BC099654-1|AAH99654.1| 912|Homo sapiens GRID2 protein protein. 29 8.2
BC099653-1|AAH99653.1| 1007|Homo sapiens glutamate receptor, ion... 29 8.2
BC099652-1|AAH99652.1| 1007|Homo sapiens glutamate receptor, ion... 29 8.2
AB209318-1|BAD92555.1| 1009|Homo sapiens glutamate receptor, ion... 29 8.2
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 157 bits (381), Expect = 1e-38
Identities = 71/91 (78%), Positives = 85/91 (93%), Gaps = 1/91 (1%)
Frame = +2
Query: 35 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 211
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 212 AEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
AEE+H KTK+RKQ+GRIM+KGDNITL+Q+V+
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 157 bits (381), Expect = 1e-38
Identities = 71/91 (78%), Positives = 85/91 (93%), Gaps = 1/91 (1%)
Frame = +2
Query: 35 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 211
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 212 AEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
AEE+H KTK+RKQ+GRIM+KGDNITL+Q+V+
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 157 bits (381), Expect = 1e-38
Identities = 71/91 (78%), Positives = 85/91 (93%), Gaps = 1/91 (1%)
Frame = +2
Query: 35 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 211
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 212 AEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
AEE+H KTK+RKQ+GRIM+KGDNITL+Q+V+
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 157 bits (381), Expect = 1e-38
Identities = 71/91 (78%), Positives = 85/91 (93%), Gaps = 1/91 (1%)
Frame = +2
Query: 35 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 211
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 212 AEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
AEE+H KTK+RKQ+GRIM+KGDNITL+Q+V+
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 153 bits (371), Expect = 2e-37
Identities = 69/91 (75%), Positives = 84/91 (92%), Gaps = 1/91 (1%)
Frame = +2
Query: 35 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 211
MAY G KVQKVMVQPINLIFRYLQNRS++Q+WLYE VN++IEG I+GFDEYMN+VLD+
Sbjct: 1 MAYSGQGQKVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDD 60
Query: 212 AEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
AEE+H KTK+RKQ+GRIM+KGDNITL+Q+V+
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 147 bits (356), Expect = 1e-35
Identities = 64/80 (80%), Positives = 77/80 (96%)
Frame = +2
Query: 65 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNR 244
KVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+AEE+H KTK+R
Sbjct: 1 KVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 60
Query: 245 KQIGRIMMKGDNITLIQNVN 304
KQ+GRIM+KGDNITL+Q+V+
Sbjct: 61 KQLGRIMLKGDNITLLQSVS 80
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 133 bits (322), Expect = 2e-31
Identities = 57/73 (78%), Positives = 70/73 (95%)
Frame = +2
Query: 86 NLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIM 265
NLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+AEE+H KTK+RKQ+GRIM
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78
Query: 266 MKGDNITLIQNVN 304
+KGDNITL+Q+V+
Sbjct: 79 LKGDNITLLQSVS 91
>S60260-1|AAC60592.1| 104|Homo sapiens B-raf protein.
Length = 104
Score = 82.2 bits (194), Expect = 6e-16
Identities = 38/48 (79%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = +2
Query: 35 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIV 175
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N ++G + GFD +MN+V+DE E+ + + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N ++G + GFD +MN+V+DE E+ + + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N ++G + GFD +MN+V+DE E+ + + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N ++G + GFD +MN+V+DE E+ + + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N ++G + GFD +MN+V+DE E+ + + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N ++G + GFD +MN+V+DE E+ + + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N ++G + GFD +MN+V+DE E+ + + IG ++++G++I +++
Sbjct: 10 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 59
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N ++G + GFD +MN+V+DE E+ + + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N ++G + GFD +MN+V+DE E+ + + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N ++G + GFD +MN+V+DE E+ + + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 35.5 bits (78), Expect = 0.072
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEA-EEVHMKTKNRKQI--GRIMMKGDNITLIQNVN 304
I G + GFD+ +N++LDE+ E V ++ +Q+ G +++GDN+ +I ++
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEID 74
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 35.5 bits (78), Expect = 0.072
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEA-EEVHMKTKNRKQI--GRIMMKGDNITLIQNVN 304
I G + GFD+ +N++LDE+ E V ++ +Q+ G +++GDN+ +I ++
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEID 74
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 35.5 bits (78), Expect = 0.072
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEA-EEVHMKTKNRKQI--GRIMMKGDNITLIQNVN 304
I G + GFD+ +N++LDE+ E V ++ +Q+ G +++GDN+ +I ++
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEID 74
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 35.5 bits (78), Expect = 0.072
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEA-EEVHMKTKNRKQI--GRIMMKGDNITLIQNVN 304
I G + GFD+ +N++LDE+ E V ++ +Q+ G +++GDN+ +I ++
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEID 74
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 32.7 bits (71), Expect = 0.51
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEA-EEVHMKTKNRKQI--GRIMMKGDNI 283
I G + GFD+ +N++LDE+ E V ++ +Q+ G +++GDN+
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNV 67
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 29.5 bits (63), Expect = 4.7
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLD-------EAEEVHMKTKNRKQIGRIMMKGDNITLI 292
G + GFD +N+VLD + ++ + T++ +Q+G ++ +G ++ LI
Sbjct: 35 GILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 84
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 29.5 bits (63), Expect = 4.7
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLD-------EAEEVHMKTKNRKQIGRIMMKGDNITLI 292
G + GFD +N+VLD + ++ + T++ +Q+G ++ +G ++ LI
Sbjct: 35 GILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 84
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 29.5 bits (63), Expect = 4.7
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLD-------EAEEVHMKTKNRKQIGRIMMKGDNITLI 292
G + GFD +N+VLD + ++ + T++ +Q+G ++ +G ++ LI
Sbjct: 35 GILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 84
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 29.5 bits (63), Expect = 4.7
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLD-------EAEEVHMKTKNRKQIGRIMMKGDNITLI 292
G + GFD +N+VLD + ++ + T++ +Q+G ++ +G ++ LI
Sbjct: 77 GILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 7 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 55
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 22 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 70
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 22 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 70
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVH-MKTKNRKQ--------IGRIMMKGDNI 283
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>AF009014-1|AAC39579.1| 1007|Homo sapiens glutamate receptor delta-2
subunit protein.
Length = 1007
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
+E ++V FD + I+ +E +V ++ R+ IGR+ + + QN++
Sbjct: 247 VETNLVAFDCHWIIINEEINDVDVQELVRRSIGRLTIIRQTFPIPQNIS 295
>BC099654-1|AAH99654.1| 912|Homo sapiens GRID2 protein protein.
Length = 912
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
+E ++V FD + I+ +E +V ++ R+ IGR+ + + QN++
Sbjct: 152 VETNLVAFDCHWIIINEEINDVDVQELVRRSIGRLTIIRQTFPVPQNIS 200
>BC099653-1|AAH99653.1| 1007|Homo sapiens glutamate receptor,
ionotropic, delta 2 protein.
Length = 1007
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
+E ++V FD + I+ +E +V ++ R+ IGR+ + + QN++
Sbjct: 247 VETNLVAFDCHWIIINEEINDVDVQELVRRSIGRLTIIRQTFPVPQNIS 295
>BC099652-1|AAH99652.1| 1007|Homo sapiens glutamate receptor,
ionotropic, delta 2 protein.
Length = 1007
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
+E ++V FD + I+ +E +V ++ R+ IGR+ + + QN++
Sbjct: 247 VETNLVAFDCHWIIINEEINDVDVQELVRRSIGRLTIIRQTFPVPQNIS 295
>AB209318-1|BAD92555.1| 1009|Homo sapiens glutamate receptor,
ionotropic, delta 2 variant protein.
Length = 1009
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
+E ++V FD + I+ +E +V ++ R+ IGR+ + + QN++
Sbjct: 249 VETNLVAFDCHWIIINEEINDVDVQELVRRSIGRLTIIRQTFPVPQNIS 297
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,068,566
Number of Sequences: 237096
Number of extensions: 1113025
Number of successful extensions: 1837
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1837
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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