Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A09
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 136 5e-33
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 40 7e-04
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 40 7e-04
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 38 0.003
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 31 0.34
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 30 0.59
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 29 1.4
AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical... 29 1.4
AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical... 29 1.4
Z75952-4|CAB00094.2| 303|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z73972-9|CAB60280.2| 353|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z71177-10|CAB60279.2| 353|Caenorhabditis elegans Hypothetical p... 27 5.5
U70850-1|AAB09124.2| 104|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z70780-2|CAA94821.1| 468|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical ... 26 9.5
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 26 9.5
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 26 9.5
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 136 bits (330), Expect = 5e-33
Identities = 61/86 (70%), Positives = 74/86 (86%)
Frame = +2
Query: 56 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKT 235
K+ KVMVQP+NLIFRYLQNR+RVQIWLYE+V R+EG+I+GFDE+MN+V DEAEEV+MKT
Sbjct: 5 KLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKT 64
Query: 236 KNRKQIGRIMMKGDNITLIQNVNPNA 313
K R +IGRI++KGDNITLI A
Sbjct: 65 KGRNKIGRILLKGDNITLIHAAQQEA 90
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N N R+ G + GFD +MN+V+DEA E + K +G +++G+++ +++
Sbjct: 22 NGNRRVSGILRGFDPFMNMVIDEAVE-YQKDGGSVNLGMTVIRGNSVVIME 71
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQ 295
N N R+ G + GFD +MN+V+DEA E + K +G +++G+++ +++
Sbjct: 22 NGNRRVSGILRGFDPFMNMVIDEAVE-YQKDGGSVNLGMTVIRGNSVVIME 71
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 125 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKT--KNRKQIGRIMMKGDNITLI 292
+IW+ + I G + GFD+Y+N+VL++ E K ++ I++ G++IT++
Sbjct: 25 KIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGNHITML 82
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 31.1 bits (67), Expect = 0.34
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +2
Query: 152 LRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
+ +G +V D YMN+ L AEE ++ ++ +G I+++ +N+ + V+
Sbjct: 29 MEYKGVLVAVDSYMNLQLAHAEE-YIDGNSQGNLGEILIRCNNVLYVGGVD 78
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/52 (26%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +2
Query: 158 IEGHIVGFDEYMNIVLDEA-EEVHMKTKN--RKQIGRIMMKGDNITLIQNVN 304
I G + GFD+ +N+V+++A E + +T+ +G +++G+N+ +I ++
Sbjct: 23 IVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRGENVAIIGEID 74
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Frame = +2
Query: 164 GHIVGFDEYMNIVLDEAEEVHMKTKN-------RKQIGRIMMKGDNITLI 292
G + GFD+ +N+VLD+ E +N +Q+G I+ +G IT++
Sbjct: 36 GVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVARGTAITVV 85
>AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical
protein Y105E8A.24b protein.
Length = 1127
Score = 29.1 bits (62), Expect = 1.4
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = -1
Query: 250 LFPVLSFHMNFFSFI----QNNVHVF----VKSHDVPLDSQIHVLVKPNLYTASIL*ISE 95
L P+L FH+N I + N V + S ++ +D H + + YT +++
Sbjct: 410 LEPLLIFHLNVLERITARMKENYEVGTISDIISEELAIDGGQHTKLCCDAYTD--FGVAK 467
Query: 94 DKIDGLYHHLLNFRWAFISHFE 29
++ D LYHHL+N F F+
Sbjct: 468 ERSDVLYHHLMNKNAKFAEFFK 489
>AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical
protein Y105E8A.24a protein.
Length = 1161
Score = 29.1 bits (62), Expect = 1.4
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = -1
Query: 250 LFPVLSFHMNFFSFI----QNNVHVF----VKSHDVPLDSQIHVLVKPNLYTASIL*ISE 95
L P+L FH+N I + N V + S ++ +D H + + YT +++
Sbjct: 410 LEPLLIFHLNVLERITARMKENYEVGTISDIISEELAIDGGQHTKLCCDAYTD--FGVAK 467
Query: 94 DKIDGLYHHLLNFRWAFISHFE 29
++ D LYHHL+N F F+
Sbjct: 468 ERSDVLYHHLMNKNAKFAEFFK 489
>Z75952-4|CAB00094.2| 303|Caenorhabditis elegans Hypothetical
protein F29D10.3 protein.
Length = 303
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 399 KMLRTLFMMHLNTRNDSSLILYFITY 322
K LRT F +HL T N + L+ + +
Sbjct: 2 KTLRTFFSIHLQTENSLKMFLFLLIF 27
>Z73972-9|CAB60280.2| 353|Caenorhabditis elegans Hypothetical
protein F15H10.8 protein.
Length = 353
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 286 RYIVSLHHYSTDLFPVLSFHMNFFSFIQNN 197
RY S HY +F V+ N FSF NN
Sbjct: 22 RYRKSFLHYCAIIFVVIFLVFNLFSFDSNN 51
>Z71177-10|CAB60279.2| 353|Caenorhabditis elegans Hypothetical
protein F15H10.8 protein.
Length = 353
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 286 RYIVSLHHYSTDLFPVLSFHMNFFSFIQNN 197
RY S HY +F V+ N FSF NN
Sbjct: 22 RYRKSFLHYCAIIFVVIFLVFNLFSFDSNN 51
>U70850-1|AAB09124.2| 104|Caenorhabditis elegans Hypothetical
protein F28F9.3 protein.
Length = 104
Score = 27.1 bits (57), Expect = 5.5
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -3
Query: 386 HSL*CI*TLGMIPHLSCTL*PITLMRSDLHFVLALYCLPSSLFYRF 249
HSL + LG +P +S L PI+L S+ + LYC P SL F
Sbjct: 37 HSL-LVLPLGDLPKISIAL-PISLALSNSLALTFLYCKPVSLISGF 80
>Z70780-2|CAA94821.1| 468|Caenorhabditis elegans Hypothetical
protein F46B6.4 protein.
Length = 468
Score = 26.6 bits (56), Expect = 7.2
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Frame = +2
Query: 71 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAE-------EVHM 229
MV I L RS V WLY N + IE I G ++V++E+E H+
Sbjct: 399 MVTKCKTIRLRLDARSPVIEWLYHNELVVIEPTIDGNYLIFDVVMNESEIGRFRKKFAHL 458
Query: 230 KTKNRKQI 253
K KN + +
Sbjct: 459 KKKNSQSV 466
>AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical
protein H24G06.1c protein.
Length = 760
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 283 YIVSLHHYSTDLFPVLSFHMNFFSFIQNNVHVFVKSHDVPL 161
YIV L T + V++ H + + I + H SHD P+
Sbjct: 497 YIVDLSFSDTPIIDVINAHDHDVTSIDFSDHASTSSHDHPI 537
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 283 YIVSLHHYSTDLFPVLSFHMNFFSFIQNNVHVFVKSHDVPL 161
YIV L T + V++ H + + I + H SHD P+
Sbjct: 497 YIVDLSFSDTPIIDVINAHDHDVTSIDFSDHASTSSHDHPI 537
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 283 YIVSLHHYSTDLFPVLSFHMNFFSFIQNNVHVFVKSHDVPL 161
YIV L T + V++ H + + I + H SHD P+
Sbjct: 497 YIVDLSFSDTPIIDVINAHDHDVTSIDFSDHASTSSHDHPI 537
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,559,715
Number of Sequences: 27780
Number of extensions: 188232
Number of successful extensions: 512
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -