Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A09
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   2.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   2.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   5.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 220 FFSFIQNNVHVFVKSHDVPLDSQIHVLVKPNLY 122
           FF   +  V V +K  D P +  I  L K + +
Sbjct: 257 FFIISRGQVRVTIKQPDTPEEKYIRTLSKGDFF 289


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 1   DEGFCTVIHFRNGL 42
           +EGFC VI   +GL
Sbjct: 161 NEGFCAVISMHDGL 174


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 1   DEGFCTVIHFRNGL 42
           +EGFC VI   +GL
Sbjct: 156 NEGFCAVISMHDGL 169


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 33 KWLIKAHLKFKR*WYSP 83
          KW++  ++K KR W  P
Sbjct: 34 KWVVYNNIKRKRSWSRP 50


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 33  KWLIKAHLKFKR*WYSP 83
           KW++  ++K KR W  P
Sbjct: 155 KWVVYNNIKRKRSWSRP 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,622
Number of Sequences: 438
Number of extensions: 2033
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)