Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A09
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 128 1e-30
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 126 5e-30
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 43 1e-04
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 42 2e-04
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 39 0.002
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 37 0.006
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr... 33 0.058
At4g13985.1 68417.m02163 F-box family protein contains F-box dom... 31 0.31
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 30 0.54
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 30 0.54
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 28 2.2
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta... 28 2.9
At5g57450.2 68418.m07178 DNA repair family protein contains simi... 27 3.8
At5g57450.1 68418.m07177 DNA repair family protein contains simi... 27 3.8
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 27 3.8
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 27 3.8
At5g08141.1 68418.m00950 bZIP transcription factor family protei... 27 5.1
At2g21480.1 68415.m02556 protein kinase family protein contains ... 27 5.1
At5g56810.1 68418.m07089 F-box family protein contains F-box dom... 27 6.7
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ... 26 8.9
At3g51910.1 68416.m05694 heat shock transcription factor family ... 26 8.9
At2g26150.1 68415.m03138 heat shock transcription factor family ... 26 8.9
At1g79930.1 68414.m09340 heat shock protein, putative contains P... 26 8.9
At1g55840.1 68414.m06404 SEC14 cytosolic factor (SEC14) / phosph... 26 8.9
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 128 bits (310), Expect = 1e-30
Identities = 56/81 (69%), Positives = 71/81 (87%)
Frame = +2
Query: 56 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKT 235
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I GFDEYMN+VLDEAEEV +K
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64
Query: 236 KNRKQIGRIMMKGDNITLIQN 298
K RK +GRI++KGDNITL+ N
Sbjct: 65 KTRKPLGRILLKGDNITLMMN 85
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 126 bits (305), Expect = 5e-30
Identities = 55/81 (67%), Positives = 70/81 (86%)
Frame = +2
Query: 56 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKT 235
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I GFDEYMN+VLDEAEEV +K
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64
Query: 236 KNRKQIGRIMMKGDNITLIQN 298
RK +GRI++KGDNITL+ N
Sbjct: 65 NTRKPLGRILLKGDNITLMMN 85
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/70 (27%), Positives = 42/70 (60%)
Frame = +2
Query: 98 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGD 277
+Y+ + ++++ N N + G + GFD++MN+V+D EV+ K IG ++++G+
Sbjct: 12 KYMDKKLQIKL----NANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 65
Query: 278 NITLIQNVNP 307
+I ++ + P
Sbjct: 66 SIVTVEALEP 75
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/70 (27%), Positives = 42/70 (60%)
Frame = +2
Query: 98 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGD 277
+Y+ + ++++ N N + G + GFD++MN+V+D EV+ K IG ++++G+
Sbjct: 12 KYMDKKLQIKL----NANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKT--DIGMVVIRGN 65
Query: 278 NITLIQNVNP 307
+I ++ + P
Sbjct: 66 SIVTVEALEP 75
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +2
Query: 125 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRK--QIGRIMMKGDNITLI 292
+IW+ + + G + GFD Y+N+VL++ E + + R+ ++ +I++ G+NI ++
Sbjct: 21 KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL 78
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 36.7 bits (81), Expect = 0.006
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 143 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQ---IGRIMMKGDNITLI 292
N I G + GFD+ NI+LDE+ E TK Q +G +++GDNI +I
Sbjct: 20 NDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVI 72
>At5g49760.1 68418.m06163 leucine-rich repeat family protein / protein
kinase family protein contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 953
Score = 33.5 bits (73), Expect = 0.058
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +2
Query: 110 NRSRVQIWLYENVNLRI---EGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDN 280
N+SR L E ++ I G++ GF++Y+++ L EE + NR +G ++ + +N
Sbjct: 847 NKSRSLYDLQELLDTTIIASSGNLKGFEKYVDLALRCVEEEGV---NRPSMGEVVKEIEN 903
Query: 281 ITLIQNVNPNA 313
I + +NPN+
Sbjct: 904 IMQLAGLNPNS 914
>At4g13985.1 68417.m02163 F-box family protein contains F-box domain
Pfam:PF00646
Length = 459
Score = 31.1 bits (67), Expect = 0.31
Identities = 25/99 (25%), Positives = 45/99 (45%)
Frame = +2
Query: 8 VFAQ*YIFEMAYKGPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDE 187
VF + + FEM G P ++ + V INL VQ+ + +L ++ D+
Sbjct: 187 VFDEDFAFEMLVSGCPVLESLSVNKINL----NDISESVQV---SSQSLLSFSYVADDDD 239
Query: 188 YMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNVN 304
Y+ +V+D A +H N K+ +MK L +++
Sbjct: 240 YLEVVID-APRLHYLKLNDKRTASFIMKNHGSLLKADID 277
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 30.3 bits (65), Expect = 0.54
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Frame = +2
Query: 155 RIEGHIVGFDEYMNIVLDEAEEV---H---MKTKNR-KQIGRIMMKGDNITLI 292
++ G + G+D+ +N+VLDEA E H +KT ++ +++G I+ +G + L+
Sbjct: 28 QVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 30.3 bits (65), Expect = 0.54
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Frame = +2
Query: 155 RIEGHIVGFDEYMNIVLDEAEEV---H---MKTKNR-KQIGRIMMKGDNITLI 292
++ G + G+D+ +N+VLDEA E H +KT ++ +++G I+ +G + L+
Sbjct: 28 QVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 77 QPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEV 223
+P++LI L R+ + L + LR G + FD+++N++L + EEV
Sbjct: 11 EPLDLI--RLSIEERIYVKLRSDRELR--GKLHAFDQHLNMILGDVEEV 55
>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
putative / snRNP-F, putative / Sm protein F, putative
similar to SWISS-PROT:Q15356 small nuclear
ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
[Mouse]
Length = 88
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 152 LRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRIMMKGDNITLIQNV 301
+ +G + D YMN+ L EE ++ + +G I+++ +N+ ++ V
Sbjct: 28 MEYKGFLASVDSYMNLQLGNTEE-YIDGQLTGNLGEILIRCNNVLYVRGV 76
>At5g57450.2 68418.m07178 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 27.5 bits (58), Expect = 3.8
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = -1
Query: 274 SLHHYSTDLFPVLSFHMNFFSFIQNNVHVFVKSHDVPLDSQIHVLVKPNLYTASIL*ISE 95
SL+ +S FP H +F Q+N ++ +D P D HV V+ N+++ L
Sbjct: 76 SLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCD---HVFVQ-NVHSVDHLFDIM 131
Query: 94 DKIDG 80
+IDG
Sbjct: 132 PRIDG 136
>At5g57450.1 68418.m07177 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 27.5 bits (58), Expect = 3.8
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = -1
Query: 274 SLHHYSTDLFPVLSFHMNFFSFIQNNVHVFVKSHDVPLDSQIHVLVKPNLYTASIL*ISE 95
SL+ +S FP H +F Q+N ++ +D P D HV V+ N+++ L
Sbjct: 76 SLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCD---HVFVQ-NVHSVDHLFDIM 131
Query: 94 DKIDG 80
+IDG
Sbjct: 132 PRIDG 136
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/54 (22%), Positives = 31/54 (57%), Gaps = 11/54 (20%)
Frame = +2
Query: 155 RIEGHIVGFDEYMNIVLDEAEE-----------VHMKTKNRKQIGRIMMKGDNI 283
++ G + FD +MN+VL + EE ++ + ++R+ +G ++++G+ +
Sbjct: 26 QLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEV 79
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/54 (22%), Positives = 31/54 (57%), Gaps = 11/54 (20%)
Frame = +2
Query: 155 RIEGHIVGFDEYMNIVLDEAEE-----------VHMKTKNRKQIGRIMMKGDNI 283
++ G + FD +MN+VL + EE ++ + ++R+ +G ++++G+ +
Sbjct: 26 QLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEV 79
>At5g08141.1 68418.m00950 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
Length = 137
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 134 LYENVNLRIEGHIVGFDEYM----NIVLDEAEEVHMKTKNRKQIGRIMMK 271
L++ ++ ++ H+ D+Y N+V DE + + NR+ R M+
Sbjct: 6 LHDEDDVHVQDHVYNHDQYHHQQPNVVTDEEKRLRRMASNRESARRTRMR 55
>At2g21480.1 68415.m02556 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 871
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 78 SPSILSSDIYKIEAVYKFGFTR 143
SP L++ I++ EA+YKF TR
Sbjct: 103 SPIYLTAKIFREEAIYKFHLTR 124
>At5g56810.1 68418.m07089 F-box family protein contains F-box domain
Pfam:PF00646
Length = 435
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1
Query: 286 RYIVSLHHYSTDLFPVLSFHMNFFSFIQNNVHVFVKSHDVPLDSQIHVLVK--PNLYTAS 113
+ + S+ H S DL+P + FH++ + +H+ + +D + + L+K PNL +
Sbjct: 279 KVLTSVEHLSLDLYPSMVFHLDDRFISKQLLHLKLDIYDNFQSNLLLSLLKDLPNLQSLK 338
Query: 112 I 110
+
Sbjct: 339 L 339
>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 469
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 238 LSFHMNFFSFIQNNVHVFVKSHD 170
LS H F++ Q + HVFV SHD
Sbjct: 195 LSDHYPFWNRSQGSDHVFVASHD 217
>At3g51910.1 68416.m05694 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 272
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 271 LHHYSTDLFPVLSFHMNFFSFI-QNNVHVFVK 179
LH +ST L P H NF SFI Q N + F K
Sbjct: 61 LHSFSTILLPRHFKHSNFSSFIRQLNTYGFRK 92
>At2g26150.1 68415.m03138 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 345
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 268 HHYSTDLFPVLSFHMNFFSFI-QNNVHVFVK 179
H +ST L P H NF SFI Q N + F K
Sbjct: 77 HKFSTTLLPRYFKHSNFSSFIRQLNTYGFRK 107
>At1g79930.1 68414.m09340 heat shock protein, putative contains Pfam
profile: PF00012 Heat shock hsp70 proteins; similar to
heat-shock proteins GB:CAA94389, GB:AAD55461
[Arabidopsis thaliana]
Length = 831
Score = 26.2 bits (55), Expect = 8.9
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +2
Query: 23 YIFEMAYKGPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIV 202
Y+++M K K Q+ + F L N V+ WLYE+ +G V E + V
Sbjct: 629 YVYDMRNKLSDKYQEYITDSEREAF--LANLQEVEDWLYEDGEDETKGVYVAKLEELKKV 686
Query: 203 LDEAEEVHMKTKNRKQI 253
D E + ++ R +
Sbjct: 687 GDPVEVRYKESLERGSV 703
>At1g55840.1 68414.m06404 SEC14 cytosolic factor (SEC14) /
phosphoglyceride transfer protein similar to
polyphosphoinositide binding protein SEC14 homolog Ssh1p
(GB:AAB94598) [Glycine max]; identified in Eur J Biochem
1998 Dec 1;258(2):402-10 as AtSEC14, characterized by
functional complementation in S. cerevisiae.
Length = 325
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -1
Query: 280 IVSLHHYSTDLFPVLSFHMNFFSFIQNNVHVFVKSH 173
+V + YS + PV++ + ++ + +VH +V+SH
Sbjct: 91 LVGVSGYSKEGLPVIAIGVGLSTYDKASVHYYVQSH 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,766,475
Number of Sequences: 28952
Number of extensions: 166295
Number of successful extensions: 424
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -