BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_A08 (478 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 158 5e-40 SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 156 2e-39 SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 27 1.1 SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 2.6 SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 5.9 SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 5.9 SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 25 5.9 SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 5.9 SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 7.9 SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 7.9 >SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Schizosaccharomyces pombe|chr 1|||Manual Length = 127 Score = 158 bits (383), Expect = 5e-40 Identities = 71/122 (58%), Positives = 96/122 (78%) Frame = +1 Query: 109 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 288 I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65 Query: 289 SGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRS 468 +G + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++RS Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRS 125 Query: 469 QE 474 QE Sbjct: 126 QE 127 >SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosaccharomyces pombe|chr 2|||Manual Length = 127 Score = 156 bits (378), Expect = 2e-39 Identities = 71/122 (58%), Positives = 95/122 (77%) Frame = +1 Query: 109 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 288 IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65 Query: 289 SGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRS 468 +G + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++RS Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRS 125 Query: 469 QE 474 QE Sbjct: 126 QE 127 >SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporter|Schizosaccharomyces pombe|chr 2|||Manual Length = 531 Score = 27.5 bits (58), Expect = 1.1 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = -2 Query: 231 LTLEAPTYSVVDTSRFTPVPLKFIITIRLVTNKSFRPLF 115 +T+ A Y V+ + +I+T L+TN +F+PL+ Sbjct: 48 MTIVASLYPVIGSEFKLMNNASYIVTAYLITNTAFQPLY 86 >SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1576 Score = 26.2 bits (55), Expect = 2.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 397 VFSRRRHVRFPRSISCSASSGSPVRERCGP 308 VFS R++RF S S S SP + GP Sbjct: 1296 VFSMLRYIRFHNSKQSSKHSPSPTLKSVGP 1325 >SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1098 Score = 25.0 bits (52), Expect = 5.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 133 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258 F H D YD+L NW++ ++ +RFK NI G Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863 >SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 693 Score = 25.0 bits (52), Expect = 5.9 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +1 Query: 148 SDRYDKLKRN-WRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVR 324 + R D++ N RK G+ + F L NIGYG+ K + + +K +H++ Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHDII 562 Query: 325 E 327 E Sbjct: 563 E 563 >SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr 1|||Manual Length = 923 Score = 25.0 bits (52), Expect = 5.9 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = -2 Query: 468 GTETSGRVGHPDAEL-LGTLDYSL--PFFRGDAMCDFRAVFPVLH 343 G + +G G+PDAEL + + ++ PFFR A D + P L+ Sbjct: 627 GADVAGFFGNPDAELFVRWYETAIFYPFFRAHAHIDTKRREPWLY 671 >SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 834 Score = 25.0 bits (52), Expect = 5.9 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = -2 Query: 150 RLVTNKSFRPLFDDCRSVNRSDS---HFKLFH*E 58 R++ ++++RPL DD + R S H KL H E Sbjct: 385 RIINHENYRPLMDDIEILLRDQSFVGHPKLEHLE 418 >SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1373 Score = 24.6 bits (51), Expect = 7.9 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = +2 Query: 287 PAVFVKSWSTTFANWR---S**CRTGNTARKSHM 379 P V +W T ANW + C TGNT ++++ Sbjct: 447 PLSTVPAWQETLANWTPDLNSICYTGNTESRANI 480 >SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr 1|||Manual Length = 647 Score = 24.6 bits (51), Expect = 7.9 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +1 Query: 100 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 249 R T VK+R K I+ S+ + KP G R R+ K Y +P + Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,040,089 Number of Sequences: 5004 Number of extensions: 41103 Number of successful extensions: 117 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 117 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 184476110 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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