Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A08
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841    185   2e-47
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...   168   2e-42
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...   159   1e-39
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...   126   7e-30
02_02_0355 + 9312814-9313650                                           30   1.1  
02_02_0511 + 11072699-11073146,11076148-11076365                       27   7.8  

>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score =  185 bits (450), Expect = 2e-47
 Identities = 91/133 (68%), Positives = 106/133 (79%)
 Frame = +1

Query: 79  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 259 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 438
           S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I 
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119

Query: 439 VTNAAARLRSQEN 477
           VTN  ARLRSQE+
Sbjct: 120 VTNKLARLRSQED 132


>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score =  168 bits (408), Expect = 2e-42
 Identities = 81/122 (66%), Positives = 97/122 (79%)
 Frame = +1

Query: 79  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 259 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 438
           S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I 
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119

Query: 439 VT 444
           ++
Sbjct: 120 IS 121


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score =  159 bits (385), Expect = 1e-39
 Identities = 74/101 (73%), Positives = 86/101 (85%)
 Frame = +1

Query: 175 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 354
           +WR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 99  SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158

Query: 355 KYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRSQEN 477
            YCAEIAH VS+KKRK IVERA QL I VTN  ARLRSQE+
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQED 199



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1

Query: 79  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 171
           MA+ P+    IVKKR K+F R  SDRY  LK
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score =  126 bits (305), Expect = 7e-30
 Identities = 59/94 (62%), Positives = 74/94 (78%)
 Frame = +1

Query: 73  FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 252
           ++M + P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIG
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIG 379

Query: 253 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 354
           YGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 380 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413


>02_02_0355 + 9312814-9313650
          Length = 278

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +3

Query: 237 DAQHWLWFK*EDPSHATQRFS*SLGPQRSRTGDPDDAEQEILRGNRTWRLLEKTEGYSR 413
           D+Q WL    +D  HA         P+    GD  D + E  R  R W      EG+ R
Sbjct: 3   DSQQWLHGDGDDVEHAAAMTMTEAAPRDDEPGDRRDVDDENERRQRRW----TAEGFGR 57


>02_02_0511 + 11072699-11073146,11076148-11076365
          Length = 221

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 455 AAALVTLMLSCWARSTIAFRFFEETPCAISAQYFLF 348
           AA  V +  SC     + F +F + PC   AQY+ +
Sbjct: 148 AAGFVNIDSSCCPGPCMPFPYFNQPPCDNRAQYWFW 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,212,397
Number of Sequences: 37544
Number of extensions: 296294
Number of successful extensions: 854
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)