Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A08
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             218   2e-57
SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_41874| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)                   27   7.9  
SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_33336| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)                 27   7.9  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  218 bits (532), Expect = 2e-57
 Identities = 99/131 (75%), Positives = 116/131 (88%)
 Frame = +1

Query: 85  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 264
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 265 KKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVT 444
           KKTR ++P GF+K +VHNV+ELE+LMM NR Y AEIAH VSS+KRKAIVERAQQLSI+VT
Sbjct: 62  KKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVT 121

Query: 445 NAAARLRSQEN 477
           N+ ARLRS+EN
Sbjct: 122 NSNARLRSEEN 132


>SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -2

Query: 321 NVVDQDFTKTAG*HVTGLLI*TITNVGHQVLTLEAPTYSVVDTSRFT-PVPLKFIITIRL 145
           N  D D+    G  +T +   T+T +    +T    T ++  T+  T  + +    TI  
Sbjct: 2   NSYDHDYEFELGTPITTITTITVTTITVTTITTTITTITITTTTTITITITITITTTITT 61

Query: 144 VTNKSFRPLFDDCR 103
           +T  +  PL   CR
Sbjct: 62  ITTTTGDPLESTCR 75


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = -2

Query: 345 HHQDLQFANVVDQDFTKTAG*HVTGLLI*TITNVGHQVLTLEAPTY--SVVDTSRFT-PV 175
           HH   QFA     +   T G   T  +   IT  G ++ TL   ++  + V T +FT P+
Sbjct: 501 HHITFQFAGAPRPEIHTTNGNTTTTSVFAPITTSGPRISTLPVGSHLTNGVQTMQFTRPM 560

Query: 174 PLKFIITI-RLVTNKSFRPL 118
             +F   I +LV   +F PL
Sbjct: 561 TTEFTQPIMKLVAPATFLPL 580


>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = -2

Query: 345 HHQDLQFANVVDQDFTKTAG*HVTGLLI*TITNVGHQVLTLEAPTY--SVVDTSRFT-PV 175
           HH   QFA     +   T G   T  +   IT  G ++ TL   ++  + V T +FT P+
Sbjct: 190 HHITFQFAGAPRPEIHTTNGNTTTTSVFAPITTSGPRISTLPVGSHLTNGVQTMQFTRPM 249

Query: 174 PLKFIITI-RLVTNKSFRPL 118
             +F   I +LV   +F PL
Sbjct: 250 TTEFTQPIMKLVAPATFLPL 269


>SB_41874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 289 WVACDGSSY-LNHNQCWASSIDP*SAYVL 206
           W+AC G++Y  ++++C  S +D  S Y++
Sbjct: 99  WIACHGATYAYDNSECRVSGMDHLSRYII 127


>SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 403 PSVFSRRRHVRFPRSISCSASSGSP-VRERCGPRLYEN 293
           PSV+ +RR    PRS SC  S G P V ER  PR   N
Sbjct: 4   PSVWEQRRKPARPRSNSC--SPGDPLVLERPPPRWSSN 39


>SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 376  VRFPRSISCSASSGSPVRERCGPRLYEN 293
            V  PRS+  + S+GSP+R + G RL EN
Sbjct: 923  VAIPRSLRFTWSTGSPIR-KSGRRLSEN 949


>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
          Length = 671

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 22  SARGSPRGSLPRFLVK*FKMAIRPVY--RPTIVKKRTKRFIRHQSDRYDKLKRNWRK 186
           +A   P GS PRFL      A    +  R T+++  T     HQ  +YD ++++ RK
Sbjct: 539 TAPALPEGSFPRFLNTFIAHACGKCHNHRETVIEYITSNIQSHQPSQYD-VRKSIRK 594


>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 29  EGHRVVHCRVS**NNLKWLSDLFTDRQSSKRGRKDLFVTSRI 154
           EG+R + C  +   N K + D   +   S   RKDLF+TS++
Sbjct: 37  EGYRHIDCAYAY-RNEKEVGDALRELLGSVVERKDLFITSKL 77


>SB_33336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 270 DPSHATQRFS*SLGPQRSRTGDPDDAEQE 356
           D  H  +R S  + PQ   TG P  AE E
Sbjct: 97  DQRHLEKRMSLMMAPQADTTGSPGGAEHE 125


>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
          Length = 342

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 394 FSRRRHVRFPRSISCSASSGSPVRERCGPRLYENRW 287
           + RRR    P SI+ S  + + V E CG  L  N W
Sbjct: 79  YRRRRTFLAPCSINTSQRTSTNVLEPCGKSLSLNSW 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,026,311
Number of Sequences: 59808
Number of extensions: 340575
Number of successful extensions: 1211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)