Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A08
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   262   1e-72
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              26   0.18 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  262 bits (642), Expect = 1e-72
 Identities = 122/133 (91%), Positives = 130/133 (97%)
 Frame = +1

Query: 79  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 259 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 438
           SNKKTRHMLP+GFRKVLVHNV+ELE+LMMQNRK+CAEIAHG SSKKRK+IVERAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIR 120

Query: 439 VTNAAARLRSQEN 477
           VT A+ARLRSQEN
Sbjct: 121 VTYASARLRSQEN 133


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 210 YSVVDTSR-FTPVPLKFIITIRLVTNKSFRPLFDDCRSVNRSDSHFK 73
           ++++D +  F P  +K ++ + L+   S + L  DC +++  + H K
Sbjct: 70  FNILDKNNVFKPQGIKAVMEL-LIDENSVKQLVSDCSTISEENPHLK 115


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 EVSTTEYVGASRVNT*CPTLVMVQIRRPVTCYPAVFVKS 307
           +++ T  V +S ++   P +VM+ I   + CY    VKS
Sbjct: 187 DLTPTYAVVSSSISFYVPCIVMLGIYCRLYCYAQKHVKS 225


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 13/61 (21%), Positives = 26/61 (42%)
 Frame = +1

Query: 235 LMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVE 414
           L   +  G   + +  +P G+   +   + EL  L +  + +   + HG+    R  IV+
Sbjct: 66  LAAKVWNGQYARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRMKHGLI---RDLIVD 122

Query: 415 R 417
           R
Sbjct: 123 R 123


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 379 GVSSKKRKAIVERAQQLSIR 438
           G   KK+K  +  AQ LSIR
Sbjct: 89  GAKQKKKKRSLMGAQGLSIR 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,041
Number of Sequences: 438
Number of extensions: 2970
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)